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Cette sélection propose, pour chaque auteur du Cirad, les articles de revues, les ouvrages et les chapitres d'ouvrages, les actes de congrès, les thèses et les mémoires HDR référencés dans la base de données documentaire du Cirad, Agritrop. Un accès au texte intégral est proposé lorsqu'il est disponible.

Roumagnac Philippe

Unité d'affectation : UMR PHIM (Bios)

Année de publication :

Type de document :

90 publications

A novel divergent geminivirus identified in asymptomatic new world cactaceae plants

Fontenele R.S., Salywon A.M., Majure L.C., Cobb I.N., Bhaskara A., Avalos-Calleros J., Argüello-Astorga G., Schmidlin K., Khalifeh A., Smith K., Schreck J., Lund M., Köhler M., Wojciechowski M., Hodgson W.C., Puente-Martinez R., Van Doorslaer K., Kumari S.G., Vernière C., Filloux D., Roumagnac P., Lefeuvre P., Ribeiro S.G., Kraberger S., Martin D.P., Varsani A.. 2020. Viruses, 12 (4) : 26 p..

https://doi.org/10.3390/v12040398

Article de revue

Alfalfa leaf curl virus is transmitted by Aphis craccivora in a highly specific circulative manner

Ryckebusch F., Sauvion N., Granier M., Roumagnac P., Peterschmitt M.. 2020. Virology, 546 : p. 98-108.

https://doi.org/10.1016/j.virol.2020.04.004

Article de revue

Diverse genomoviruses representing twenty-nine species identified associated with plants

Fontenele R.S., Roumagnac P., Richet C., Kraberger S., Stainton D., Aleamotu`a M., Filloux D., Bernardo P., Harkins G.W., McCarthy J., Charles L.S., Lamas N.S., Abreu E.F.M., Abreu R.A., Batista G.B., Lacerda A.L.M., Salywon A.M., Wojciechowski M., Majure L.C., Martin D.P., Ribeiro S.G., Lefeuvre P., Varsani A.. 2020. Archives of Virology, 165 (12) : p. 2891-2901.

https://doi.org/10.1007/s00705-020-04801-5

Article de revue

First report of Sugarcane streak mosaic virus in sugarcane (Saccharum spp.) in Côte d'Ivoire

Daugrois J.H., Roumagnac P., Kouakou Y., Oura O.J.D.T., Pita J.S.. 2020. New Disease Reports, 41 : p. 22.

https://doi.org/10.5197/j.2044-0588.2020.041.022

Article de revue

High-throughput sequencing for deciphering the virome of alfalfa (Medicago sativa L.)

Bejerman N., Roumagnac P., Nemchinov L.G.. 2020. Frontiers in Microbiology, 11 : 17 p..

https://doi.org/10.3389/fmicb.2020.553109

Article de revue

Illuminating an ecological blackbox: Using high throughput sequencing to characterize the plant virome across scales

Maclot F., Candresse T., Filloux D., Malmstrom C.M., Roumagnac P., van der Vlugt R., Massart S.. 2020. Frontiers in Microbiology, 11 : 16 p..

https://doi.org/10.3389/fmicb.2020.578064

Article de revue

Improvements in virus detection at CIRAD's sugarcane quarantine using both viral metagenomics and PCR-Based approaches

Fernandez E., Ferdinand R., Filloux D., Guinet I., Julian C., Rott P., Roumagnac P., Daugrois J.H.. 2020. Sugar Tech, 22 : p. 498-503.

https://doi.org/10.1007/s12355-019-00790-1

Article de revue

Molecular detection of sugarcane striate virus and sugarcane white streak virus and their prevalence in the Miami World Collection of sugarcane and related grasses

Boukari W., Filloux D., Daugrois J.H., Fernandez E., Mollov D.S., Kaye C., Hincapie M., Sanchez A., Wang J., Roumagnac P., Rott P.. 2020. Plant Pathology, 69 (6) : p. 1060-1069.

https://doi.org/10.1111/ppa.13192

Article de revue

Sorghum mastrevirus-associated alphasatellites: New geminialphasatellites associated with an African streak mastrevirus infecting wild Poaceae plants on Reunion Island

Claverie S., Varsani A., Hoareau M., Filloux D., Roumagnac P., Martin D.P., Lefeuvre P., Lett J.M.. 2020. Archives of Virology, 165 (8) : p. 1925-1928.

https://doi.org/10.1007/s00705-020-04685-5

https://rdcu.be/b5TC4

https://www.ncbi.nlm.nih.gov/nuccore/MN901967

https://www.ncbi.nlm.nih.gov/nuccore/MN901975

Article de revue

Symptom evolution following the emergence of maize streak virus

Monjane A.L., Dellicour S., Hartnady P., Oyeniran K.A., Owor B.E., Bezeidenhout M., Linderme D., Syed R.A., Donaldson L., Murray S., Rybicki E.P., Kvarnheden A., Yazdkhasti E., Lefeuvre P., Froissart R., Roumagnac P., Shepherd D.N., Harkins G.W., Suchard M., Lemey P., Varsani A., Martin D.P.. 2020. eLife, 9 : 19 p..

https://doi.org/10.7554/eLife.51984

Article de revue

Yam asymptomatic virus 1, a novel virus infecting yams (Dioscorea spp.) with significant prevalence in a germplasm collection

Marais A., Umber M., Filloux D., Gomez R.M., Faure C., Pavis C., Julian C., Roumagnac P., Acina Manbole I.N., Bonheur L., Theil S., Contreras S., Candresse T., Teycheney P.Y.. 2020. Archives of Virology, 165 : p. 2653-2657.

https://doi.org/10.1007/s00705-020-04787-0

https://rdcu.be/b7aYk

https://www.ncbi.nlm.nih.gov/nuccore/MT409627

https://www.ncbi.nlm.nih.gov/nuccore/MT409662

https://www.ncbi.nlm.nih.gov/nuccore/MT409682

Article de revue

A new prevalent densovirus discovered in Acari. Insight from metagenomics in viral communities associated with two-spotted mite (Tetranychus urticae) populations

François S., Mutuel D., Duncan A.B., Rodrigues L.R., Danzelle C., Lefevre S., Santos I., Frayssinet M., Fernandez E., Filloux D., Roumagnac P., Froissart R., Ogliastro M.. 2019. Viruses, 11 (3) : 24 p..

https://doi.org/10.3390/v11030233

Article de revue

Diverse and variable virus communities in wild plant populations revealed by metagenomic tools

Susi H., Filloux D., Frilander M.J., Roumagnac P., Laine A.L.. 2019. PeerJ, 7 : 24 p..

https://doi.org/10.7717/peerj.6140

Article de revue

Emergence of southern rice black-streaked dwarf virus in the centuries-old Chinese Yuanyang agrosystem of rice landraces

Alonso P., Gladieux P., Moubset O., Shih P.J., Mournet P., Frouin J., Blondin L., Ferdinand R., Fernandez E., Julian C., Filloux D., Adreit H., Fournier E., Ducasse A., Grosbois V., Morel J.B., Huang H., Jin B., He X., Martin D.P., Vernière C., Roumagnac P.. 2019. Viruses, 11 (11) : 13 p..

https://doi.org/10.3390/v11110985

Article de revue

Evolution and ecology of plant viruses

Lefeuvre P., Martin D.P., Elena S.F., Shepherd D.N., Roumagnac P., Varsani A.. 2019. Nature Reviews. Microbiology : 13 p..

https://doi.org/10.1038/s41579-019-0232-3

Article de revue

Exploring the diversity of Poaceae infecting mastreviruses on Reunion Island using a viral metagenomicsbased approach

Claverie S., Ouattara A., Hoareau M., Filloux D., Varsani A., Roumagnac P., Martin D.P., Lett J.M., Lefeuvre P.. 2019. Scientific Reports, 9 : 11 p..

https://doi.org/10.1038/s41598-019-49134-9

Article de revue

High-throughput sequencing of complete genomes of ipomoviruses associated with an epidemic of cassava brown streak disease in the Comoros Archipelago

Scussel S., Candresse T., Marais A., Claverie S., Hoareau M., Azali Hamza A., Verdin E., Tepfer M., Filloux D., Fernandez E., Roumagnac P., Robene I., Lefeuvre P., Jourda C., Roux-Cuvelier M., Lett J.M.. 2019. Archives of Virology, 164 (8) : p. 2193-2196.

https://doi.org/10.1007/s00705-019-04228-7

Article de revue

Le phytobiome et l'agriculture de demain

Roumagnac P., Sanguin H.. 2019. TDC - Textes et Documents pour la Classe (1124) : p. 34-37.

https://www.reseau-canope.fr/notice/tdc-n-1124-1er-novembre-2019.html

Article de revue

Novel circular DNA viruses associated with Apiaceae and Poaceae from South Africa and New Zealand

Richet C., Kraberger S., Filloux D., Bernardo P., Harkins G.W., Martin D.P., Roumagnac P., Varsani A.. 2019. Archives of Virology, 164 (1) : p. 237-242.

https://doi.org/10.1007/s00705-018-4031-3

https://www.ncbi.nlm.nih.gov/nuccore/MH425569

https://www.ncbi.nlm.nih.gov/nuccore/MH425573

Article de revue

Alphasatellitidae: A new family with two subfamilies for the classication of geminivirus- and nanovirus-associated alphasatellites

Briddon R.W., Martin D.P., Roumagnac P., Navas-Castillo J., Fiallo-Olivé E., Moriones E., Lett J.M., Zerbini F.M., Varsani A.. 2018. Archives of Virology, 163 (9) : p. 2587-2600.

https://doi.org/10.1007/s00705-018-3854-2

Article de revue

Characterization of alfalfa virus F, a new member of the genus Marafivirus

Nemchinov L.G., François S., Roumagnac P., Ogliastro M., Hammond R.W., Mollov D.S., Filloux D.. 2018. PloS One, 13 (9) : 11 p..

https://doi.org/10.1371/journal.pone.0203477

https://www.ncbi.nlm.nih.gov/nuccore/MG676465

Article de revue

Comparison of loop-mediated isothermal amplification, polymerase chain reaction, and selective isolation assays for detection of Xanthomonas albilineans from sugarcane

Duarte Dias V., Fernandez E., Cunha M.G., Pieretti I., Hincapie M., Roumagnac P., Comstock J.C., Rott P.. 2018. Tropical Plant Pathology, 43 (4) : p. 351-359.

https://doi.org/10.1007/s40858-018-0216-2

Article de revue

First report of alfalfa leaf curl Virus affecting alfalfa (Medicago sativa) in Jordan, Lebanon, Syria, and Tunisia

Kumari S.G., Moukahel A.R., Richet C., Galzi S., Filloux D., Roumagnac P., Asaad N., Hijazi J., Mghandef S.. 2018. Plant Disease, 102 (10) : 2 p..

https://doi.org/10.1094/PDIS-03-18-0404-PDN

Article de revue

First report of alfalfa leaf curl Virus from alfalfa in Iran

Davoodi Z., Heydarnejad J., Massumi H., Richet C., Galzi S., Filloux D., Roumagnac P.. 2018. Plant Disease, 102 (11) : p. 2385.

https://doi.org/10.1094/PDIS-04-18-0571-PDN

Article de revue

Geometagenomics illuminates the impact of agriculture on the distribution and prevalence of plant viruses at the ecosystem scale

Bernardo P., Charles-Dominique T., Barakat M., Ortet P., Fernandez E., Filloux D., Hartnady P., Rebelo T.A., Cousins S., Mesleard F., Cohez D., Yaverkovski N., Varsani A., Harkins G.W., Peterschmitt M., Malmstrom C., Martin D.P., Roumagnac P.. 2018. ISME Journal, 12 : p. 174-184.

http://dx.doi.org/10.1038/ismej.2017.155

Article de revue

Increase in taxonomic assignment efficiency of viral reads in metagenomic studies

François S., Filloux D., Frayssinet M., Roumagnac P., Martin D.P., Ogliastro M., Froissart R.. 2018. Virus Research, 244 : p. 230-234.

http://dx.doi.org/10.1016/j.virusres.2017.11.011

Article de revue

Nanopore-based detection and characterization of yam viruses

Filloux D., Fernandez E., Loire E., Claude L., Galzi S., Candresse T., Winter S., Jeeva M.L., Makeshkumar T., Martin D.P., Roumagnac P.. 2018. Scientific Reports, 8 : 11 p..

https://doi.org/10.1038/s41598-018-36042-7

Article de revue

Nanovirus-alphasatellite complex identi ed in Vicia cracca in the Rho^ne delta region of France

Gallet R., Kraberger S., Filloux D., Galzi S., Fontes H., Martin D.P., Varsani A., Roumagnac P.. 2018. Archives of Virology, 163 (3) : p. 695-700.

https://doi.org/10.1007/s00705-017-3634-4

Article de revue

Notes on recombination and reassortment in multipartite/segmented viruses

Varsani A., Lefeuvre P., Roumagnac P., Martin D.P.. 2018. Current Opinion in Virology, 33 : p. 156-166.

https://doi.org/10.1016/j.coviro.2018.08.013

Article de revue

The westward journey of alfalfa leaf curl virus

Davoodi Z., Bejerman N., Richet C., Filloux D., Kumari S.G., Chatzivassiliou E.K., Galzi S., Julian C., Samarfard S., Trucco V., Giolitti F., Fiallo-Olivé E., Navas-Castillo J., Asaad N., Rahman Moukahel A., Hijazi J., Mghandef S., Heydarnejad J., Massumi H., Varsani A., Dietzgen R.G., Harkins G.W., Martin D.P., Roumagnac P.. 2018. Viruses, 10 (10) : 16 p..

https://doi.org/10.3390/v10100542

Article de revue

Viral metagenomic-based screening of sugarcane from florida reveals occurrence of six sugarcane-infecting viruses and high prevalence of Sugarcane yellow leaf virus

Filloux D., Fernandez E., Comstock J.C., Mollov D.S., Roumagnac P., Rott P.. 2018. Plant Disease, 102 (11) : p. 2317-2323.

https://doi.org/10.1094/PDIS-04-18-0581-RE

Article de revue

From spatial metagenomics to molecular characterization of plant viruses: A geminivirus case study

Claverie S., Bernardo P., Kraberger S., Hartnady P., Lefeuvre P., Lett J.M., Galzi S., Filloux D., Harkins G.W., Varsani A., Martin D.P., Roumagnac P.. 2018. In : Malmstrom Carolyn M. (ed.). Environmental virology and virus ecology. Burlington : Academic Press, p. 55-83. (Advances in Virus Research, 101).

https://doi.org/10.1016/bs.aivir.2018.02.003

Chapitre d'ouvrage

Viral metagenomics and sugarcane pathogens

Roumagnac P., Mollov D.S., Daugrois J.H., Filloux D.. 2018. In : Rott Philippe (ed.). Achieving sustainable cultivation of sugarcane. Volume 2: Breeding, pests and diseases. Cambridge : Burleigh Dodds Science Publishing, p. 183-200. (Burleigh Dodds Series in Agricultural Science).

http://dx.doi.org/10.19103/AS.2017.0035.20

Chapitre d'ouvrage

Viral metagenomics approaches for high-resolution screening of multiplexed arthropod and plant viral communities

François S., Filloux D., Fernandez E., Ogliastro M., Roumagnac P.. 2018. In : Pantaleo Vitantonio (ed.), Chiumenti Michela (ed.). Viral metagenomics: methods and protocols. New York : Humana Press, p. 77-95. (Methods in Molecular Biology, 1746).

http://dx.doi.org/10.1007/978-1-4939-7683-6_7

Chapitre d'ouvrage

Capulavirus and Grablovirus: Two new genera in the family Geminiviridae

Varsani A., Roumagnac P., Fuchs M., Navas-Castillo J., Moriones E., Idris A., Briddon R.W., Rivera-Bustamante R., Zerbini F.M., Martin D.P.. 2017. Archives of Virology, 162 (6) : p. 1819-1831.

http://dx.doi.org/10.1007/s00705-017-3268-6

Article de revue

Complete genome sequences of cowpea polerovirus 1 and cowpea polerovirus 2 infecting cowpea plants in Burkina Faso

Palanga E., Martin D.P., Galzi S., Zabré J., Bouda Z., Bouma Neya J., Sawadogo M., Traoré O., Peterschmitt M., Roumagnac P., Filloux D.. 2017. Archives of Virology, 162 (7) : p. 2149-2152.

http://dx.doi.org/10.1007/s00705-017-3327-z

Article de revue

Exploiting genetic information to trace plant virus dispersal in landscapes

Picard C., Dallot S., Brunker K., Berthier K., Roumagnac P., Soubeyrand S., Jacquot E., Thébaud G.. 2017. Annual Review of Phytopathology, 55 : p. 139-160.

http://dx.doi.org/10.1146/annurev-phyto-080516-035616

Article de revue

First report of maize yellow mosaic virus infecting maize in Burkina Faso

Palanga E., Longué R.D.S., Koala M., Néya J.B., Traoré O., Martin D.P., Peterschmitt M., Filloux D., Roumagnac P.. 2017. New Disease Reports, 35 : p. 26.

https://doi.org/10.5197/j.2044-0588.2017.035.026

https://www.ndrs.org.uk/article.php?id=035026

Article de revue

Genome sequences of a capulavirus infecting Plantago lanceolata in the Aland archipelago of Finland

Susi H., Laine A.L., Filloux D., Kraberger S., Farkas K., Bernardo P., Frilander M.J., Martin D.P., Varsani A., Roumagnac P.. 2017. Archives of Virology, 162 (7) : p. 2041-2045.

http://dx.doi.org/10.1007/s00705-017-3298-0

https://www.ncbi.nlm.nih.gov/nuccore/KT214389

https://www.ncbi.nlm.nih.gov/nuccore/KT214390

Article de revue

ICTV virus taxonomy profile: Geminiviridae

Zerbini F.M., Briddon R.W., Idris A., Martin D.P., Moriones E., Navas-Castillo J., Rivera-Bustamante R., Roumagnac P., Varsani A.. 2017. Journal of General Virology, 98 : p. 131-133.

http://dx.doi.org/10.1099/jgv.0.000738

Article de revue

Occurrence of a novel mastrevirus in sugarcane germplasm collections in Florida, Guadeloupe and Réunion

Boukari W., Alcala-Briseño R.I., Kraberger S., Fernandez E., Filloux D., Daugrois J.H., Comstock J.C., Lett J.M., Martin D.P., Varsani A., Roumagnac P., Polston J.E., Rott P.. 2017. Virology Journal, 14 : 8 p..

http://dx.doi.org/10.1186/s12985-017-0810-9

https://www.ncbi.nlm.nih.gov/nuccore/KX352040

https://www.ncbi.nlm.nih.gov/nuccore/KX352056

Article de revue

Two novel Alphaflexiviridae members revealed by deep sequencing of the Vanilla (Orchidaceae) virome

Grisoni M., Marais A., Filloux D., Saison A., Faure C., Julian C., Theil S., Contreras S., Teycheney P.Y., Roumagnac P., Candresse T.. 2017. Archives of Virology, 162 (12) : p. 3855-3861.

https://doi.org/10.1007/s00705-017-3540-9

Article de revue

Le microbiote des plantes : un ménage à trois milliards ?

Roumagnac P.. 2017. Montpellier : Université de Montpellier, 49 p.. Habilitation à diriger des recherches.

HDR

Discovery of parvovirus-related sequences in an unexpected broad range of animals

François S., Filloux D., Roumagnac P., Bigot D., Gayral P., Martin D.P., Froissart R., Ogliastro M.. 2016. Scientific Reports, 6 (30880) : 13 p..

http://dx.doi.org/10.1038/srep30880

Article de revue

Diverse circular replication-associated protein encoding viruses circulating in invertebrates within a lake ecosystem

Dayaram A., Galatowitsch M.L., Argüello-Astorga G., van Bysterveldt K., Kraberger S., Stainton D., Harding J.S., Roumagnac P., Martin D.P., Lefeuvre P., Varsani A.. 2016. Infection, Genetics and Evolution, 39 : p. 304-316.

http://dx.doi.org/10.1016/j.meegid.2016.02.011

Article de revue

Metagenomic-based screening and molecular characterization of cowpea-infecting viruses in Burkina Faso

Palanga E., Filloux D., Martin D.P., Fernandez E., Gargani D., Ferdinand R., Zabré J., Bouda Z., Neya B., Sawadogo M., Traoré O., Peterschmitt M., Roumagnac P.. 2016. PloS One, 11 (10) : 21 p..

http://dx.doi.org/10.1371/journal.pone.0165188

Article de revue

Molecular characterization and prevalence of two capulaviruses: Alfalfa leaf curl virus from France and Euphorbia caput-medusae latent virus from South Africa

Bernardo P., Muhire B., François S., Deshoux M., Hartnady P., Farkas K., Kraberger S., Filloux D., Fernandez E., Galzi S., Ferdinand R., Granier M., Marais A., Monge Blasco P., Candresse T., Escriu F., Varsani A., Harkins G.W., Martin D.P., Roumagnac P.. 2016. Virology, 493 : p. 142-153.

http://dx.doi.org/10.1016/j.virol.2016.03.016

http://www.ncbi.nlm.nih.gov/nuccore/?term=KT214350

Article de revue

Prevalence of Sugarcane yellow leaf virus in sugarcane producing regions in Kenya revealed by reverse transcription loop-mediated isothermal amplification method

Amata R.L., Fernandez E., Filloux D., Martin D.P., Rott P., Roumagnac P.. 2016. Plant Disease, 100 (2) : p. 260-268.

http://dx.doi.org/10.1094/PDIS-05-15-0602-RE

http://www.ncbi.nlm.nih.gov/nuccore/KR608791

Article de revue

Alfalfa leaf curl virus: an aphid-transmitted geminivirus

Roumagnac P., Granier M., Bernardo P., Deshoux M., Ferdinand R., Galzi S., Fernandez E., Julian C., Abt I., Filloux D., Mesleard F., Varsani A., Blanc S., Martin D.P., Peterschmitt M.. 2015. Journal of Virology, 89 (18) : p. 9683-9688.

http://dx.doi.org/10.1128/JVI.00453-15

http://www.ncbi.nlm.nih.gov/nuccore/KP732474

Article de revue

Identification of novel Bromus- and Trifolium-associated circular DNA viruses

Kraberger S., Farkas K., Bernardo P., Booker C., Argüello-Astorga G., Mesleard F., Martin D.P., Roumagnac P., Varsani A.. 2015. Archives of Virology, 160 (5) : p. 1303-1311.

http://dx.doi.org/10.1007/s00705-015-2358-6

http://www.ncbi.nlm.nih.gov/nuccore/KM510189

http://www.ncbi.nlm.nih.gov/nuccore/KM510190

http://www.ncbi.nlm.nih.gov/nuccore/KM510191

http://www.ncbi.nlm.nih.gov/nuccore/KM510192

http://www.ncbi.nlm.nih.go

Article de revue

Metagenomic analysis of the sugarcane virome in Florida reveals prevalent and potential novel viruses

Fernandez E., Filloux D., Comstock J.C., Roumagnac P., Rott P.. 2015. Phytopathology, 105 (11S) : p. S4.43. 2015 APS Annual Meeting, 2015-08-01/2015-08-05, Pasadena (Etats-Unis).

https://apsjournals.apsnet.org/toc/phyto/105/11S

Article de revue

Plant virus metagenomics: Advances in virus discovery

Roossinck M.J., Martin D.P., Roumagnac P.. 2015. Phytopathology, 105 (6) : p. 716-727.

http://dx.doi.org/10.1094/PHYTO-12-14-0356-RVW

Article de revue

The genomes of many yam species contain transcriptionally active endogenous geminiviral sequences that may be functionally expressed

Filloux D., Murrell S., Koohapitagtam M., Golden M., Julian C., Galzi S., Uzest M., Rodier-Goud M., D'Hont A., Vernerey M.S., Wilkin P., Peterschmitt M., Winter S., Murrell B., Martin D.P., Roumagnac P.. 2015. Virus Evolution, 1 (1) : 17 p..

http://dx.doi.org/10.1093/ve/vev002

http://www.ncbi.nlm.nih.gov/nuccore/KJ629184

http://www.ncbi.nlm.nih.gov/nuccore/KJ629217

http://www.ncbi.nlm.nih.gov/nuccore/KJ629237

http://www.ncbi.nlm.nih.gov/nuccore/KJ629251

http://www.ncbi.nlm.nih.gov/nuccor

Article de revue

Visacane: An innovative quarantine tool for the exchange of pest and disease-free sugarcane germplasm

Guinet-Brial I., Girard J.C., Roumagnac P., Daugrois J.H., Fernandez E., Rott P.. 2015. International Sugar Journal : p. 890-896.

https://www.internationalsugarjournal.com/paper/visacane-an-innovative-quarantine-tool-for-the-exchange-of-pest-and-disease-free-sugarcane-germplasm/

Article de revue

Metagenomics approaches based on virion-associated nucleic acids (VANA): an innovative tool for assessing without A priori viral diversity of plants

Filloux D., Dallot S., Delaunay A., Galzi S., Jacquot E., Roumagnac P.. 2015. In : Lacomme Christophe (ed.). Plant pathology: techniques and protocols. New York : Springer [Etats-Unis], p. 249-257. (Methods in Molecular Biology, 1302).

http://dx.doi.org/10.1007/978-1-4939-2620-6_18

Chapitre d'ouvrage

SNaPshot and CE-SSCP: two simple and cost-effective methods to reveal genetic variability within a virus species

Delaunay A., Dallot S., Filloux D., Dupuy V., Roumagnac P., Jacquot E.. 2015. In : Lacomme Christophe (ed.). Plant pathology: techniques and protocols. New York : Springer [Etats-Unis], p. 187-206. (Methods in Molecular Biology, 1302).

http://dx.doi.org/10.1007/978-1-4939-2620-6_15

Chapitre d'ouvrage

A novel itera-like densovirus isolated by viral metagenomics from the sea barley Hordeum marinum

François S., Bernardo P., Filloux D., Roumagnac P., Yaverkovski N., Froissart R., Ogliastro M.. 2014. Genome Announcements, 2 (6) : 2 p..

http://dx.doi.org/10.1128/genomeA.01196-14

Article de revue

Appearances can be deceptive: Revealing a hidden viral infection with deep sequencing in a plant quarantine Context

Candresse T., Filloux D., Muhire B., Julian C., Galzi S., Fort G., Bernardo P., Daugrois J.H., Fernandez E., Martin D.P., Varsani A., Roumagnac P.. 2014. PloS One, 9 (7) : 13 p..

http://dx.doi.org/10.1371/journal.pone.0102945

Article de revue

First report of Acidovorax avenae subsp. avenae causing sugarcane red stripe in Gabon

Girard J.C., Noëll J., Larbre F., Roumagnac P., Rott P.. 2014. Plant Disease, 98 (5) : p. 684-684.

http://dx.doi.org/10.1094/PDIS-09-13-0914-PDN

Article de revue

Molecular characterization of yam virus X, a new potexvirus infecting yams (Dioscorea spp) and evidence for the existence of at least three distinct potexviruses infecting yams

Acina Manbole I.N., Bonheur L., Svanella-Dumas L., Filloux D., Gomez R.M., Faure C., Lange D., Anzala F., Pavis C., Marais A., Roumagnac P., Candresse T., Teycheney P.Y.. 2014. Archives of Virology, 159 (12) : p. 3421-3426.

http://dx.doi.org/10.1007/s00705-014-2211-3

Article de revue

Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics

Vayssier-Taussat M., Albina E., Citti C., Cosson J.F., Jacques M.A., Lebrun M.H., Le Loir Y., Ogliastro M., Petit M.A., Roumagnac P., Candresse T.. 2014. Frontiers in Cellular and Infection Microbiology, 4 (29) : 7 p..

http://dx.doi.org/10.3389/fcimb.2014.00029

Article de revue

The genome of African yam (Dioscorea cayenensis-rotundata complex) hosts endogenous sequences from four distinct badnavirus species

Umber M., Filloux D., Muller E., Laboureau N., Galzi S., Roumagnac P., Iskra Caruana M.L., Pavis C., Teycheney P.Y., Seal S.. 2014. Molecular Plant Pathology, 15 (8) : p. 790-801.

https://doi.org/10.1111/mpp.12137

Article de revue

First report of sugarcane leaf scald in Gabon caused by a highly virulent and aggressive strain of Xanthomonas albilineans

Mensi I., Girard J.C., Pieretti I., Larbre F., Roumagnac P., Royer M., Rott P.. 2013. Plant Disease, 97 (7) : p. 988-988.

http://dx.doi.org/10.1094/PDIS-01-13-0044-PDN

Article de revue

Identification and characterisation of a highly divergent geminivirus: Evolutionary and taxonomic implications

Bernardo P., Golden M., Akram M., Naimuddin, Nadarajan N., Fernandez E., Granier M., Rebelo A., Peterschmitt M., Martin D.P., Roumagnac P.. 2013. Virus Research, 177 (1) : p. 35-45.

http://dx.doi.org/10.1016/j.virusres.2013.07.006

Article de revue

Métagénomique virale et pathologie Une histoire récente

Bernardo P., Albina E., Eloit M., Roumagnac P.. 2013. MS - Médecine Sciences, 29 (5) : p. 501-508.

http://dx.doi.org/10.1051/medsci/2013295013

Article de revue

Genetic diversity of sugarcane yellow leaf virus in a sugarcane selection plot in Guadeloupe (FWI)

Girard J.C., Fernandez E., Daugrois J.H., Roques D., Roumagnac P., Rott P.. 2012. International Sugar Journal, 114 (1358) : p. 104-108. ISSCT Congress. 27, 2010-03-07/2010-03-11, Veracruz (Mexique).

Article de revue

Reversible oxygen-tolerant hydrogenase carried by free-living N2-fixing bacteria isolated from the rhizospheres of rice, maize, and wheat

Roumagnac P., Richaud P., Barakat M., Ortet P., Roncato M.A., Heulin T., Peltier G., Achouak W., Cournac L.. 2012. MicrobiologyOpen, 1 (4) : p. 349-361.

http://dx.doi.org/10.1002/mbo3.37

Article de revue

Phylogeography and molecular epidemiology of yersinia pestis in Madagascar

Vogler A.J., Chan F., Wagner D.M., Roumagnac P., Lee J., Nera R., Eppinger M., Ravel J., Rahalison L., Rasoamanana B.W., Beckstrom-Sternberg S.M., Achtman M., Chanteau S., Keim P.. 2011. PLoS Neglected Tropical Diseases, 5 (9) : 11 p..

http://dx.doi.org/10.1371/journal.pntd.0001319

Article de revue

Recombination in Eukaryotic single stranded DNA viruses

Martin D.P., Biagini P., Lefeuvre P., Golden M., Roumagnac P., Varsani A.. 2011. Viruses, 3 (9) : p. 1699-1738.

http://dx.doi.org/10.3390/v3091699

Article de revue

Salmonella enterica serotype typhi with nonclassical quinolone resistance phenotype

Accou-Demartin M., Gaborieau V., Song Y., Roumagnac P., Marchou B., Achtman M., Weill F.X.. 2011. Emerging Infectious Diseases, 17 (6) : p. 1091-1094.

http://dx.doi.org/10.3201/eid1706.101242

Article de revue

A multiplex single nucleotide polymorphism typing assay for detecting mutations that result in decreased fluoroquinolone susceptibility in Salmonella enterica serovars Typhi and Paratyphi A

Song Y., Roumagnac P., Weill F.X., Wain J., Dolecek C., Mazzoni C.J., Holt K.E., Achtman M.. 2010. Journal of Antimicrobial Chemotherapy, 65 (8) : p. 1631-1641.

http://dx.doi.org/10.1093/jac/dkq175

Article de revue

Evolution and population structure of Salmonella enterica serovar Newport

Sangal V., Harbottle H., Mazzoni C.J., Helmuth R., Guerra B., Didelot X., Paglietti B., Rabsch W., Brisse S., Weill F.X., Roumagnac P., Achtman M.. 2010. Journal of Bacteriology, 192 (24) : p. 6465-6476.

http://dx.doi.org/10.1128/JB.00969-10

Article de revue

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

Morelli G., Song Y., Mazzoni C.J., Eppinger M., Roumagnac P., Wagner D.M., Feldkamp M., Kusecek B., Vogler A.J., Li Y., Cui Y., Thomson N.R., Jombart T., Leblois R., Lichtner P., Rahalison L., Petersen J.M., Balloux F., Keim P., Wirth T., Ravel J., Yang R., Carniel E., Achtman M.. 2010. Nature Genetics, 42 (12) : p. 1140-1143.

http://dx.doi.org/10.1038/ng.705

Article de revue

Le dépérissement bactérien des Alliacées : émergence d'une phytobactériose

Roumagnac P., Robène-Soustrade I., Humeau L., Gagnevin L., Chiroleu F., Jeuffrault E., Pruvost O.. 2010. In : Barnouin Jacques (ed.), Sache Ivan (ed.). Les maladies émergentes : épidémiologie chez le végétal, l'animal et l'homme. Versailles : Ed. Quae, p. 211-220. (Synthèses).

Chapitre d'ouvrage

Frequent emergence and limited geographic dispersal of methicillin-resistant Staphylococcus aureus

Nübel U., Roumagnac P., Feldkamp M., Song J.H., Ko K.S., Huang Y.C., Coombs G., Ip M., Westh H., Skov R., Struelens M.J., Goering R.V., Strommenger B., Weller A., Witte W., Achtman M.. 2008. Proceedings of the National Academy of Sciences of the United States of America, 105 (37) : p. 14130-14135.

http://dx.doi.org/10.1073/pnas.0804178105

http://www.jstor.org/stable/25464187

Article de revue

High-Throughput Genotyping of Salmonella enteric Serovar Typhi allowing geographical assignment of Haplotypes and Pathotypes within an urban district of Jakarta, Indonesia

Baker S., Holt K.E., Van de Vosse E., Roumagnac P., Whitehead S., King E., Ewels P., Keniry A., Weill F.X., Lightfoot D., Van Dissel J.T., Sanderson K.E., Farrar J.J., Achtman M., Deloukas P., Dougan G.. 2008. Journal of Clinical Microbiology, 46 (5) : p. 1741-1746.

http://dx.doi.org/10.1128/JCM.02249-07

http://jcm.asm.org/content/46/5/1741.full.pdf+html

Article de revue

High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi

Holt K.E., Parkhill J., Mazzoni C.J., Roumagnac P., Weill F.X., Goodhead I., Rance R., Baker S., Maskell D.J., Wain J., Dolecek C., Achtman M., Dougan G.. 2008. Nature Genetics, 40 (8) : p. 987-993.

http://dx.doi.org/10.1038/ng.195

http://www.nature.com/ng/journal/v40/n8/pdf/ng.195.pdf

Article de revue

Polyphasic characterization of Xanthomonas axonopodis pv. allii associated with outbreaks of bacterial blight on three allium species in the Mascarene Archipelago

Picard Y., Roumagnac P., Legrand D., Humeau L., Robène-Soustrade I., Chiroleu F., Gagnevin L., Pruvost O.. 2008. Phytopathology, 98 (8) : p. 919-925.

http://dx.doi.org/10.1094/PHYTO-98-8-0919

Article de revue

Insights into structure and evolution of bacterial species that are revealed by molecular methods

Roumagnac P., Gagnevin L., Pruvost O., Achtman M.. 2007. In : Tibayrenc Michel (ed.). Encyclopedia of infectious diseases : modern methodologies. Hoboken : Wiley-Blackwell, p. 473-493.

Chapitre d'ouvrage

Quantitative and molecular epidemiology of bacterial blight of onion in seed production fields

Humeau L., Roumagnac P., Picard Y., Soustrade I., Chiroleu F., Gagnevin L., Pruvost O.. 2006. Phytopathology, 92 (12) : p. 1345-1354.

http://dx.doi.org/10.1094/PHYTO-96-1345

Article de revue

New media for the semiselective isolation and enumeration of Xanthomonas campestris pv. mangiferaeindicae, the causal agent of mango bacterial black spot

Pruvost O., Roumagnac P., Gaube C., Chiroleu F., Gagnevin L.. 2005. Journal of Applied Microbiology, 99 (4) : p. 803-815.

http://dx.doi.org/10.1111/j.1365-2672.2005.02681.x

Article de revue

Polyphasic characterization of xanthomonads isolated from onion, garlic and Welsh onion (Allium spp.) and their relatedness to different Xanthomonas species

Roumagnac P., Gagnevin L., Gardan L., Sutra L., Manceau C., Dickstein E.R., Jones J.B., Rott P., Pruvost O.. 2004. International Journal of Systematic and Evolutionary Microbiology, 54 : p. 15-24.

http://dx.doi.org/10.1099/ijs.0.02714-0

Article de revue

Spatial and temporal analyses of bacterial blight of onion caused by Xanthomonas axonopodis pv. allii

Roumagnac P., Pruvost O., Chiroleu F., Hughes G.. 2004. Phytopathology, 94 (2) : p. 138-146.

http://dx.doi.org/10.1094/PHYTO.2004.94.2.138

Article de revue

Une maladie émergente de l'oignon à la Réunion : le dépérissement bactérien causé par Xanthomonas axonopodis pv. allii

Humeau L., Roumagnac P., Soustrade I., Gagnevin L., Degas J., Jeuffrault E., Pruvost O.. 2004. Phytoma-La Défense des Végétaux (573) : p. 28-30.

Article de revue

Taxonomie et diversité du Xanthomonas responsable du dépérissement bactérien de l'oignon : études épidémiologiques du rôle des semences dans la transmission de la bactérie

Roumagnac P.. 2003. Paris : INA-PG, 113 p.. Thèse de docteur-ingénieur -- Sciences de la vie.

Thèse

Detection of Xanthomonas sp., the causal agent of onion bacterial blight, in onion seeds using a newly developed semi-selective isolation medium

Roumagnac P., Gagnevin L., Pruvost O.. 2000. European Journal of Plant Pathology, 106 (9) : p. 867-877.

http://dx.doi.org/10.1023/A:1008743120242

Article de revue

Protection des plantes. Epidémiologie des maladies virales et bactériennes

Luisetti J., Poussier S., Fock I., Roumagnac P., Gagnevin L., Notaise J., Soustrade I., Pruvost O., Rassaby L., Leclerc F., Reynaud B., Peterschmitt M.. 2000. Magazine CIRAD Réunion (17) : p. 50-55.

Article de revue

Protection des plantes

Reynaud B., Luisetti J., Poussier S., Roumagnac P., Pruvost O., Gagnevin L., Girard J.C., Rassaby L., Leclercq Le Quillec F., Goebel F.R., Vayssières J.F., Quilici S., Brévault T., Hurtrel B.. 1999. Magazine CIRAD Réunion (14) : p. 47-54.

Article de revue

Protection des plantes. Biologie des ennemis des cultures et protection des plantes

Reynaud B., Girard J.C., Goebel F.R., Grisoni M., Luisetti J., Pruvost O., Quilici S., Roumagnac P., Vayssières J.F.. 1998. Magazine CIRAD Réunion (11) : p. 44-50.

Article de revue

Protection des plantes. Inventaires des ennemis des cultures et protection des plantes

Gagnevin L., Girard J.C., Goebel F.R., Grisoni M., Luisetti J., Pruvost O., Quilici S., Roumagnac P., Vayssières J.F.. 1997. Magazine CIRAD Réunion (7) : p. 48-54.

Article de revue

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