Publications des agents du Cirad

Cirad

Cette entrée donne accès aux publications déposées dans Agritrop, pour chaque auteur en activité au Cirad.

Pradal Christophe rss

Unité d'affectation : UMR AGAP (Bios)
Année de publication : Type de document :

119 publications

A root functional-structural model allows to assess effects of water deficit on water and solute transport parameters

Bauget F., Protto V., Pradal C., Boursiac Y., Maurel C.. 2023. Journal of Experimental Botany, 74 (5) : p. 1594-1608.

DOI: 10.1093/jxb/erac471

Résumé

Article (a-revue à facteur d'impact)

Crop modeling frameworks interoperability through bidirectional source code transformation

Midingoyi C.A., Pradal C., Enders A., Fumagalli D., Lecharpentier P., Raynal H., Donatelli M., Fanchini D., Athanasiadis I., Porter C., Hoogenboom G., Oliveira F.A.A., Holzworth D., Martre P.. 2023. Environmental Modelling and Software, 168 : 14 p..

DOI: 10.1016/j.envsoft.2023.105790

Résumé

Article (a-revue à facteur d'impact)

Modeling the impact of proportion, sowing date, and architectural traits of a companion crop on foliar fungal pathogens of wheat in crop mixtures

Levionnois S., Pradal C., Fournier C., Sanner J., Robert C.. 2023. Phytopathology, 113 (10) : p. 1876-1889.

DOI: 10.1094/PHYTO-06-22-0197-R

Résumé

Article (a-revue à facteur d'impact)

Spatio-temporal analysis of strawberry architecture: insights into the control of branching and inflorescence complexity

Labadie M., Guy K., Demené M.N., Caraglio Y., Heidsieck G., Gaston A., Rothan C., Guédon Y., Pradal C., Denoyes B.. 2023. Journal of Experimental Botany, 74 (12) : p. 3595-3612.

DOI: 10.57745/XJY5RO/PMDNB5

DOI: 10.1093/jxb/erad097

Résumé

Article (a-revue à facteur d'impact)

Life Science Workflow Services (LifeSWS): motivations and architecture

Akbarinia R., Botella C., Joly A., Masseglia F., Mattoso M., Ogasawara E., De Oliveira D., Pacitti E., Porto F., Pradal C., Shasha D., Valduriez P.. 2023. In : Abdelkader Hameurlain (ed.), Min Tjoa A. (ed.). Transactions on large-scale data-and knowledge-centered systems LV. Berlin : Springer, p. 1-24. (Lecture Notes in Computer Science, 14280).

DOI: 10.1007/978-3-662-68100-8_1

Résumé

Chapitre d'ouvrage

Data-intensive scientific workflows for model-assisted high-throughput phenotyping

Pradal C.. 2023. In : Tsu-Wei Chen (ed.), Andreas Fricke (ed.), Katrin Kahlen (ed.), Susann Müller (ed.), Hartmut Stützel (ed.). Book of abstracts the 10th International Conference on Functional-Structural Plant Models (FSPM2023). Hannover : Institute of Horticultural Production Systems, p. XVI. International Conference on Functional-Structural Plant Models (FSPM2023). 10, 2023-03-27/2023-03-31, Berlin (Allemagne).

Résumé

Communication de congrès

GrapeInSilico: a modelling framework for building grapevine FSPMs

Delivorias S., Albasha R., Calonnec A., Vivin P., Pradal C., Pallas B., Fournier C.. 2023. In : Tsu-Wei Chen (ed.), Andreas Fricke (ed.), Katrin Kahlen (ed.), Susann Müller (ed.), Hartmut Stützel (ed.). Book of abstracts the 10th International Conference on Functional-Structural Plant Models (FSPM2023). Hannover : Institute of Horticultural Production Systems, p. 144-145. International Conference on Functional-Structural Plant Models (FSPM2023). 10, 2023-03-27/2023-03-31, Berlin (Allemagne).

Communication de congrès

High-throughput 2D+t root system architecture reconstruction and modelling from time-lapse phenotyping data

Fernandez R., Crabos A., Maillard M., Nacry P., Pradal C.. 2023. In : Tsu-Wei Chen (ed.), Andreas Fricke (ed.), Katrin Kahlen (ed.), Susann Müller (ed.), Hartmut Stützel (ed.). Book of abstracts the 10th International Conference on Functional-Structural Plant Models (FSPM2023). Hannover : Institute of Horticultural Production Systems, p. 62-63. International Conference on Functional-Structural Plant Models (FSPM2023). 10, 2023-03-27/2023-03-31, Berlin (Allemagne).

Communication de congrès

MaCS4Plants: A mathematic & computer science network for FSPM

Arsouze T., Beurier G., Boudon F., Fernandez R., Labadie M., Perez R., Vezy R., Jaeger M., Pradal C.. 2023. In : Tsu-Wei Chen (ed.), Andreas Fricke (ed.), Katrin Kahlen (ed.), Susann Müller (ed.), Hartmut Stützel (ed.). Book of abstracts the 10th International Conference on Functional-Structural Plant Models (FSPM2023). Hannover : Institute of Horticultural Production Systems, p. 52-53. International Conference on Functional-Structural Plant Models (FSPM2023). 10, 2023-03-27/2023-03-31, Berlin (Allemagne).

Communication de congrès

Quantitative importance of various rhizodeposition processes: lessons from a mechanistic functional-structural root model

Rees F., Gauthier M., Barillot R., Richard-Mollard C., Jullien A., Chenu C., Pradal C., Andrieu B.. 2023. In : Tsu-Wei Chen (ed.), Andreas Fricke (ed.), Katrin Kahlen (ed.), Susann Müller (ed.), Hartmut Stützel (ed.). Book of abstracts the 10th International Conference on Functional-Structural Plant Models (FSPM2023). Hannover : Institute of Horticultural Production Systems, p. 13-14. International Conference on Functional-Structural Plant Models (FSPM2023). 10, 2023-03-27/2023-03-31, Berlin (Allemagne).

Communication de congrès

SIMBAL: A structural-functional plant model to simulate C and N dynamics and shoot-root architecture of winter oilseed rape associated with legumes

Perthame L., Rees F., Cornilleau X., Richard-Mollard C., Pradal C., Jullien A., Barillot R.. 2023. In : Tsu-Wei Chen (ed.), Andreas Fricke (ed.), Katrin Kahlen (ed.), Susann Müller (ed.), Hartmut Stützel (ed.). Book of abstracts the 10th International Conference on Functional-Structural Plant Models (FSPM2023). Hannover : Institute of Horticultural Production Systems, p. 119-120. International Conference on Functional-Structural Plant Models (FSPM2023). 10, 2023-03-27/2023-03-31, Berlin (Allemagne).

Communication de congrès

2D representation of the plant architecture in strawberry

Labadie M., Caraglio Y., Pradal C., Denoyes B.. 2023. In : McCallum, S. (ed.) ; Denoyes, B. (ed.). Proceedings of the International Symposium on Advances in Berry Crops. Louvain : ISHS, p. 163-168. (Acta Horticulturae). International Horticultural Congress (IHC 2022): International Symposium on Advances in Berry Crops. 31, 2022-08-14/2022-08-20, Angers (France).

DOI: 10.17660/ActaHortic.2023.1381.22

Résumé

Communication de congrès

Connecting plant phenotyping and modelling communities: Lessons from science mapping and operational perspectives

Saint Cast C., Lobet G., Cabrera-Bosquet L., Couvreur V., Pradal C., Tardieu F., Draye X.. 2022. In Silico Plants, 4 (1) : p. 1-13.

DOI: 10.1093/insilicoplants/diac005

Résumé

Article (a-revue à facteur d'impact)

High-throughput and automatic structural and developmental root phenotyping on Arabidopsis seedlings

Fernandez R., Crabos A., Maillard M., Nacry P., Pradal C.. 2022. Plant Methods, 18 : 19 p..

DOI: 10.1186/s13007-022-00960-5

Résumé

Article (a-revue à facteur d'impact)

PhenoTrack3D: An automatic high-throughput phenotyping pipeline to track maize organs over time

Daviet B., Fernandez R., Cabrera-Bosquet L., Pradal C., Fournier C.. 2022. Plant Methods, 18 (1) : 14 p..

DOI: 10.1186/s13007-022-00961-4

Résumé

Article (a-revue à facteur d'impact)

Phenotyping and modeling of root hydraulic architecture reveal critical determinants of axial water transport

Boursiac Y., Pradal C., Bauget F., Lucas M., Delivorias S., Godin C., Maurel C.. 2022. Plant Physiology, 190 (2) : p. 1289-1306.

DOI: 10.1093/plphys/kiac281

Résumé

Article (a-revue à facteur d'impact)

Towards smart and sustainable development of modern berry cultivars in Europe

Senger E., Osorio S., Olbricht K., Shaw P., Denoyes B., Davik J., Predieri S., Karhu S., Raubach S., Lippi N., Höfer M., Cockerton H., Pradal C., Kafkas E., Litthauer S., Usadel B., Mezzetti B.. 2022. Plant Journal, 11 (5) : p. 1238-1251.

DOI: 10.1111/tpj.15876

Résumé

Article (a-revue à facteur d'impact)

An automatic phenotyping pipeline to track maize organs over time

Daviet B., Fernandez R., Cabrera-Bosquet L., Pradal C., Fournier C.. 2022. In : 7th International Plant Phenotyping Symposium: Plant phenotyping for a sustainable future. Book of abstracts. Wageningen : IPPN, p. 47. International Plant Phenotyping Symposium (IPPS 2022). 7, 2022-09-26/2022-09-30, Wageningen (Pays-Bas).

Résumé

Communication de congrès

SigFlow, a functional-structural model simulating floral induction based on inhibiting and activating signais transport in apple tree 3D structures

Belhassine F., Fumey D., Chopard J., Pradal C., Martinez S., Costes E., Pallas B.. 2022. In : Musacchi S. (ed.). Proceedings of the XII International Symposium on Integrating Canopy, Rootstock and Environmental Physiology in Orchard Systems. Louvain : ISHS, p. 75-82. (Acta Horticulturae, 1346). International Symposium on integrating canopy, Rootstock and Environmental Physiology in Orchard Systems. 12, 2021-07-26/2021-07-30, Wenatchee (Etats-Unis).

DOI: 10.17660/ActaHortic.2022.1346.10

Résumé

Communication de congrès

Apple tree adaptation to shade in agroforestry: An architectural approach

Pitchers B., Do F.C., Pradal C., Dufour L., Lauri P.E.. 2021. American Journal of Botany, 108 (5) : p. 1-12.

DOI: 10.1002/ajb2.1652

Résumé

Article (a-revue à facteur d'impact)

Cache-aware scheduling of scientific workflows in a multisite cloud

Heidsieck G., De Oliveira D., Pacitti E., Pradal C., Tardieu F., Valduriez P.. 2021. Future Generation Computer Systems, 122 : p. 172-186.

DOI: 10.5281/zenodo.1436634

DOI: 10.1016/j.future.2021.03.012

Résumé

Article (a-revue à facteur d'impact)

Crop2ML: An open-source multi-language modeling framework for the exchange and reuse of crop model components

Midingoyi C.A., Pradal C., Enders A., Fumagalli D., Raynal H., Donatelli M., Athanasiadis I., Porter C., Hoogenboom G., Holzworth D., Garcia F., Thorburn P.J., Martre P.. 2021. Environmental Modelling and Software, 142 : 15 p..

DOI: 10.1016/j.envsoft.2021.105055

Résumé

Article (a-revue à facteur d'impact)

Functional–structural plant modeling highlights how diversity in leaf dimensions and tillering capability could promote the efficiency of wheat cultivar mixtures

Blanc E., Barbillon P., Fournier C., Lecarpentier C., Pradal C., Enjalbert J.. 2021. Frontiers in Plant Science, 12 : 15 p..

DOI: 10.3389/fpls.2021.734056

Résumé

Article (a-revue à facteur d'impact)

Root phenotyping: Important and minimum information required for root modeling in crop plants

Takahashi H., Pradal C.. 2021. Breeding Science, 71 (1) : p. 109-116.

DOI: 10.1270/jsbbs.20126

Résumé

Article (a-revue à facteur d'impact)

A functional structural model of grass development based on metabolic regulations and coordination rules

Gauthier M., Barillot R., Schneider C., Chambon C., Fournier C., Pradal C., Robert C., Andrieu B.. 2020. Journal of Experimental Botany, 71 (18) : p. 5454-5468.

DOI: 10.1093/jxb/eraa276

Résumé

Article (a-revue à facteur d'impact)

iCROPM 2020: Crop modeling for the future

Hoogenboom G., Justes E., Pradal C., Launay M., Asseng S., Ewert F., Martre P.. 2020. Journal of Agricultural Science, 158 (10) : p. 791-793.

DOI: 10.1017/S0021859621000538

Résumé

Article (a-revue à facteur d'impact)

Modelling transport of inhibiting and activating signals and their combined effects on floral induction: Application to apple tree

Belhassine F., Fumey D., Chopard J., Pradal C., Martinez S., Costes E., Pallas B.. 2020. Scientific Reports, 10 : 14 p..

DOI: 10.1038/s41598-020-69861-8

Résumé

Article (a-revue à facteur d'impact)

MuSCA: A multi-scale source–sink carbon allocation model to explore carbon allocation in plants. An application to static apple tree structures

Reyes F., Pallas B., Pradal C., Vaggi F., Zanotelli D., Tagliavini M., Gianelle D., Costes E.. 2020. Annals of Botany, 126 (4) : p. 571-585.

DOI: 10.1093/aob/mcz122

Résumé

Article (a-revue à facteur d'impact)

Simulating the effects of water limitation on plant biomass using a 3D functional-structural plant model of shoot and root driven by soil hydraulic

Braghiere R.K., Gérard F., Evers J., Pradal C., Pagès L.. 2020. Annals of Botany, 126 (4) : p. 713-728.

DOI: 10.1093/aob/mcaa059

Résumé

Article (a-revue à facteur d'impact)

Reuse of process-based models: Automatic transformation into many programming languages and simulation platforms

Midingoyi C.A., Pradal C., Athanasiadis I., Donatelli M., Enders A., Fumagalli D., Garcia F., Holzworth D., Hoogenboom G., Porter C., Raynal H., Thorburn P.J., Martre P.. 2020. In Silico Plants, 3 (1) : p. -20.

DOI: 10.1093/insilicoplants/diaa007

Résumé

Article (b-revue à comité de lecture)

Efficient execution of scientific workflows in the cloud through adaptive caching

Heidsieck G., De Oliveira D., Pacitti E., Pradal C., Tardieu F., Valduriez P.. 2020. In : Hameurlain Abdelkader (ed.), Tjoa A. Min (ed.), Lamarre Philippe (ed.), Zeitouni Karine (ed.). Transactions on large-scale data- and knowledge-centered systems XLIV. Berlin : Springer, p. 41-66. (Lecture Notes in Computer Science, 12380).

DOI: 10.1007/978-3-662-62271-1_2

Résumé

Chapitre d'ouvrage

A modelling framework for the simulation of signal transport within 3D structure: application for the simulation of within-tree variability in floral induction in apple trees

Belhassine F., Fumey D., Pradal C., Chopard J., Costes E., Pallas B.. 2020. In : Kahlen Katrin (ed.), Chen Tsu-Wei (ed.), Fricke Andreas (ed.), Stützel Hartmut (ed.). Book of abstracts of the 9th International Conference on Functional-Structural Plant Models: FSPM2020, 5 - 9 October 2020. Hanovre : Institute of Horticultural Production Systems, p. 16-17. International Conference on Functional-Structural Plant Models (FSPM 2020). 9, 2020-10-05/2020-10-09, (Allemagne).

Résumé

Communication de congrès

A 3D architectural model of grass shoot morphogenesis and plasticity, driven by organ metabolite concentrations and coordination rules

Gauthier M., Barillot R., Schneider A., Chambon C., Fournier C., Pradal C., Andrieu B.. 2020. In : Kahlen Katrin (ed.), Chen Tsu-Wei (ed.), Fricke Andreas (ed.), Stützel Hartmut (ed.). Book of abstracts of the 9th International Conference on Functional-Structural Plant Models: FSPM2020, 5 - 9 October 2020. Hanovre : Institute of Horticultural Production Systems, p. 32-33. International Conference on Functional-Structural Plant Models (FSPM 2020), 2020-10-05/2020-10-09, (Allemagne).

Résumé

Communication de congrès

Co-simulation with OpenAlea and GroIMP for cross-platform functional-structural plant modelling

Long Q., Pradal C., Kurth W.. 2020. In : Kahlen Katrin (ed.), Chen Tsu-Wei (ed.), Fricke Andreas (ed.), Stützel Hartmut (ed.). Book of abstracts of the 9th International Conference on Functional-Structural Plant Models: FSPM2020, 5 - 9 October 2020. Hanovre : Institute of Horticultural Production Systems, p. 97-98. International Conference on Functional-Structural Plant Models (FSPM 2020), 2020-10-05/2020-10-09, (Allemagne).

Résumé

Communication de congrès

Distributed caching of scientific workflows in multisite cloud

Heidsieck G., De Oliveira D., Pacitti E., Pradal C., Tardieu F., Valduriez P.. 2020. In : Hartmann Sven (ed.), Küng Josef (ed.), Kotsis Gabriele (ed.), Tjoa A. Min (ed.), Khalil Ismail (ed.). Database and expert systems applications. DEXA 2020 (Part II). Cham : Springer, p. 51-65. (Lecture Notes in Computer Science, 12392). International Conference on Database and Expert Systems Application (DEXA 2020). 31, 2020-09-14/2020-09-17, Bratislava (Slovaquie).

DOI: 10.1007/978-3-030-59051-2_4

Résumé

Communication de congrès

Improving interoperability between phenomics and modelling communities by designing a Plant Modelling Ontology (PMO)

Saint Cast C., Lobet G., Cabrera-Bosquet L., Couvreur V., Pradal C., Muller B., Tardieu F., Draye X.. 2020. In : Kahlen Katrin (ed.), Chen Tsu-Wei (ed.), Fricke Andreas (ed.), Stützel Hartmut (ed.). Book of abstracts of the 9th International Conference on Functional-Structural Plant Models: FSPM2020, 5 - 9 October 2020. Hanovre : Institute of Horticultural Production Systems, p. 57-58. International Conference on Functional-Structural Plant Models (FSPM 2020), 2020-10-05/2020-10-09, (Allemagne).

Résumé

Communication de congrès

MTG as a standard representation of plants in FSPMs

Pradal C., Godin C.. 2020. In : Kahlen Katrin (ed.), Chen Tsu-Wei (ed.), Fricke Andreas (ed.), Stützel Hartmut (ed.). Book of abstracts of the 9th International Conference on Functional-Structural Plant Models: FSPM2020, 5 - 9 October 2020. Hanovre : Institute of Horticultural Production Systems, p. 86-87. International Conference on Functional-Structural Plant Models (FSPM 2020), 2020-10-05/2020-10-09, (Allemagne).

Résumé

Communication de congrès

Simulating rhizodeposition as a function of shoot and root interactions within a new 3D Functional-Structural Plant Model

Rees F., Barillot R., Gauthier M., Pagès L., Pradal C., Andrieu B.. 2020. In : Kahlen Katrin (ed.), Chen Tsu-Wei (ed.), Fricke Andreas (ed.), Stützel Hartmut (ed.). Book of abstracts of the 9th International Conference on Functional-Structural Plant Models: FSPM2020, 5 - 9 October 2020. Hanovre : Institute of Horticultural Production Systems, p. 22-23. International Conference on Functional-Structural Plant Models (FSPM 2020), 2020-10-05/2020-10-09, (Allemagne).

Résumé

Communication de congrès

Three-dimensional morphological model of water lilies Nymphaea spp. for breeding historical study

Kirié S., Pradal C., Iwasaki H., Noshita K., Iwata H.. 2020. In : Kahlen Katrin (ed.), Chen Tsu-Wei (ed.), Fricke Andreas (ed.), Stützel Hartmut (ed.). Book of abstracts of the 9th International Conference on Functional-Structural Plant Models: FSPM2020, 5 - 9 October 2020. Hanovre : Institute of Horticultural Production Systems, p. 61-62. International Conference on Functional-Structural Plant Models (FSPM 2020), 2020-10-05/2020-10-09, (Allemagne).

Résumé

Communication de congrès

Toward virtual modelling environments using notebooks for phenotyping and simulation of plant development

Boudon F., Vaillant J., Pradal C.. 2020. In : Kahlen Katrin (ed.), Chen Tsu-Wei (ed.), Fricke Andreas (ed.), Stützel Hartmut (ed.). Book of Abstracts of the 9th International Conference on Functional-Structural Plant Models:. Hanovre : Institute of Horticultural Production Systems, p. 99-100. International Conference on Functional-Structural Plant Models (FSPM 2020), 2020-10-05/2020-10-09, (Allemagne).

Résumé

Communication de congrès

What structural plant modelling and image-based phenotyping can learn from each other?

Fournier C., Artzet S., Tardieu F., Pradal C.. 2020. In : Kahlen Katrin (ed.), Chen Tsu-Wei (ed.), Fricke Andreas (ed.), Stützel Hartmut (ed.). Book of abstracts of the 9th International Conference on Functional-Structural Plant Models: FSPM2020, 5 - 9 October 2020. Hanovre : Institute of Horticultural Production Systems, p. 55-56. International Conference on Functional-Structural Plant Models (FSPM 2020), 2020-10-05/2020-10-09, (Allemagne).

Résumé

Communication de congrès

Changes in the vertical distribution of leaf area enhanced light interception efficiency in maize over generations of maize selection

Perez R., Fournier C., Cabrera-Bosquet L., Artzet S., Pradal C., Brichet N., Chen T.W., Chapuis R., Welcker C., Tardieu F.. 2019. Plant, Cell and Environment, 42 (7) : p. 2105-219.

DOI: 10.1111/pce.13539

Résumé

Article (a-revue à facteur d'impact)

Current knowledge and future research opportunities for modeling annual crop mixtures. A review

Gaudio N., Escobar-Gutièrrez A., Casadebaig P., Evers J., Gérard F., Louarn G., Colbach N., Munz S., Launay M., Marrou H., Barillot R., Hinsinger P., Bergez J.E., Combes D., Durand J.L., Frak E., Pagès L., Pradal C., Saint-Jean S., Van Der Werf W., Justes E.. 2019. Agronomy for Sustainable Development, 39 (2) : 20 p..

DOI: 10.1007/s13593-019-0562-6

Résumé

Article (a-revue à facteur d'impact)

Genetic and environmental dissection of biomass accumulation in multi-genotype maize canopies

Chen T.W., Cabrera-Bosquet L., Alvarez Prado S., Perez R., Artzet S., Pradal C., Coupel-Ledru A., Fournier C., Tardieu F.. 2019. Journal of Experimental Botany, 70 (9) : p. 2523-2534.

DOI: 10.1093/jxb/ery309

Résumé

Article (a-revue à facteur d'impact)

Investigation of complex canopies with a functional–structural plant model as exemplified by leaf inclination effect on the functioning of pure and mixed stands of wheat during grain filling

Barillot R., Chambon C., Fournier C., Combes D., Pradal C., Andrieu B.. 2019. Annals of Botany, 123 (4) : p. 727-742.

DOI: 10.1093/aob/mcy208

Résumé

Article (a-revue à facteur d'impact)

VersionClimber: Version Upgrades Without Tears

Pradal C., Cohen-Boulakia S., Valduriez P., Shasha D., Hinsen K.. 2019. Computing in Science and Engineering, 21 (5) : p. 87-93.

DOI: 10.1109/MCSE.2019.2921898

Résumé

Article (a-revue à facteur d'impact)

HydroShoot: A functional-structural plant model for simulating hydraulic structure, gas and energy exchange dynamics of complex plant canopies under water deficit - application to grapevine (Vitis vinifera L.)

Albasha R., Fournier C., Pradal C., Chelle M., Prieto J., Louarn G., Simonneau T., Lebon E.. 2019. In Silico Plants, 1 (1) : 44 p..

DOI: 10.1093/insilicoplants/diz007

Résumé

Article (b-revue à comité de lecture)

Adaptive caching for data-intensive scientific workflows in the cloud

Heidsieck G., De Oliveira D., Pacitti E., Pradal C., Tardieu F., Valduriez P.. 2019. In : Hartmann Sven (ed.), Küng Josef (ed.), Chakravarthy Sharma (ed.), Anderst-Kotsis Gabriele (ed.), Tjoa A. Min (ed.), Khalil Ismail (ed.). Database and expert systems applications. DEXA 2019. Cham : Springer, p. 452-466. (Lecture Notes in Computer Science, 11707). International Conference on Database and Expert Systems Applications (DEXA 2019). 30, 2019-08-26/2019-08-29, Linz (Autriche).

DOI: 10.1007/978-3-030-27618-8_33

Résumé

Communication de congrès

Architecture de Dataflow pour des systèmes modulaires et génériques de simulation de plante

Pradal C.. 2019. Montpellier : Université de Montpellier, 128 p.. Thèse de doctorat -- Informatique.

Résumé

Thèse

AutoWIG: Automatic generation of python bindings for C++ libraries

Fernique P., Pradal C.. 2018. PeerJ Computer Science, 4 : 31 p..

DOI: 10.7717/peerj-cs.149

Résumé

Article (a-revue à facteur d'impact)

Modelling interaction dynamics between two foliar pathogens in wheat: A multi-scale approach

Garin G., Pradal C., Fournier C., Claessen D., Houlès V., Robert C.. 2018. Annals of Botany, 121 (5) : p. 927-940.

DOI: 10.1093/aob/mcx186

Résumé

Article (a-revue à facteur d'impact)

Plant architecture and foliar senescence impact the race between wheat growth and Zymoseptoria tritici epidemics

Robert C., Garin G., Abichou M., Houlès V., Pradal C., Fournier C.. 2018. Annals of Botany, 121 (5) : p. 975-989.

DOI: 10.1093/aob/mcx192

Résumé

Article (a-revue à facteur d'impact)

Distributed management of scientific workflows for high-throughput plant phenotyping

Pradal C., Cohen-Boulakia S., Heidsieck G., Pacitti E., Tardieu F., Valduriez P.. 2018. ERCIM News (113) : p. 36-37.

Résumé

Article (b-revue à comité de lecture)

An architecture for the integration of different functional and structural plant models

Long Q., Migault V., Kurth W., Pallas B., Pradal C.. 2018. In : International Conference IEEA 18, March 28–31, 2018, Beijing, China. New York : ACM, p. 107-113. International Conference on Informatics, Environment, Energy and Applications (IEEA 2018). 7, 2018-03-28/2018-03-31, Pékin (Chine).

DOI: 10.1145/3208854.3208875

Résumé

Communication de congrès

The Agricultural Model Exchange Initiative

Martre P., Donatelli M., Pradal C., Enders A., Ahmed Midingoyi C., Athanasiadis I., Fumagalli D., Holzworth D., Hoogenboom G., Porter C., Raynal H., Rizzoli A.E., Thorburn P.J.. 2018. In : Abstracts of the 7th AgMIP Global Workshop. San José : IICA, p. 17-18. AgMIP Global Workshop. 7, 2018-04-24/2018-04-26, San José (Costa Rica).

Résumé

Communication de congrès

The role of hydraulics FSPMs in the context of root breeding : a case study on Pearl Millet

Ndour A., Pradal C., Vadez V., Passot S., Guédon Y., Laplaze L., Lucas M.. 2018. In : European Geosciences Union General Assembly 2018- volume 20. Vienne : European Geosciences Union, 1 p.. EGU2018 - European Geophysical Union General Assembly 2018, 2018-04-08/2018-04-13, Vienne (Autriche).

Résumé

Communication de congrès

Towards a model of wheat leaf morphogenesis at plant scale driven by organ-level metabolites

Gauthier M., Barillot R., Schneider A., Fournier C., Pradal C., Pinet A., Andrieu B.. 2018. In : Electronic proceedings of 2018 6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA). Hefei : IEEE, p. 94-101. International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA18). 6, 2018-11-04/2018-11-08, Hefei (Chine).

DOI: 10.1109/PMA.2018.8611578

Résumé

Communication de congrès

Using crop-pathogen modeling to identify plant traits to control Zymoseptoria tritici epidemics on wheat. PIV-58

Gigot C., Claessen D., Garin G., Fournier C., Pradal C., Robert C.. 2018. In : Thierry Langin (ed.), Gilles Charmet (ed.), Jacques Le Gouis (ed.), Philippe Leroy (ed.). Congress Abstracts of EUCARPIA Cereal section Meeting and 2nd International wheat innovation workshop. Clermont-Ferrand : INRA, p. 113-113. EUCARPIA Cereal section Meeting "Breeeding cereals for sustainable agriculture, 2018-03-19/2018-03-22, Clermont-Ferrand (France).

Résumé

Communication de congrès

Platform Migrator. Technical Report TR2018-990

Contractor M., Pradal C., Shasha D.. 2018. New-York : University of New-York, 43 p..

Résumé

Document technique

A robot-assisted imaging pipeline for tracking the growths of maize ear and silks in a high-throughput phenotyping platform

Brichet N., Fournier C., Turc O., Strauss O., Artzet S., Pradal C., Welcker C., Tardieu F., Cabrera-Bosquet L.. 2017. Plant Methods, 13 : 12 p..

DOI: 10.1186/s13007-017-0246-7

Résumé

Article (a-revue à facteur d'impact)

InfraPhenoGrid: A scientific workflow infrastructure for plant phenomics on the Grid

Pradal C., Artzet S., Chopard J., Dupuis D., Fournier C., Mielewczik M., Nègre V., Neveu P., Parigot D., Valduriez P., Cohen-Boulakia S.. 2017. Future Generation Computer Systems, 67 : p. 341-353.

DOI: 10.1016/j.future.2016.06.002

Résumé

Article (a-revue à facteur d'impact)

Morphological plant modeling: Unleashing geometric and topological potential within the plant sciences

Bucksch A., Atta-Boateng A., Azihou A.F., Battogtokh D., Baumgartner A., Binder B.M., Braybrook S., Chang C., Coneva V., DeWitt T.J., Fletcher A.G., Gehan M.A., Diaz-Martinez D.H., Hong L., Iyer-Pascuzzi A.S., Klein L.L., Leiboff S., Li M., Lynch J.P., Maizel A., Maloof J.N., Markelz R.J.C., Martinez C.C., Miller L.A., Mio W., Palubicki W., Poorter H., Pradal C., Price C.A., Puttonen E., Reese J.B., Rellán-Alavarez R., Spalding E.P., Sparks E.E., Topp C.N., Williams J.H., Chitwood D.H.. 2017. Frontiers in Plant Science, 8 : 16 p..

DOI: 10.3389/fpls.2017.00900

Résumé

Article (a-revue à facteur d'impact)

Reshaping plant biology: Qualitative and quantitative descriptors for plant morphology

Balduzzi M., Binder B.M., Bucksch A., Chang C., Hong L., Lyer-Pascuzzi A., Pradal C., Sparks E.E.. 2017. Frontiers in Plant Science, 8 : 15 p..

DOI: 10.3389/fpls.2017.00117

Résumé

Article (a-revue à facteur d'impact)

Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities

Cohen-Boulakia S., Belhajjame K., Collin O., Chopard J., Froidevaux C., Gaignard A., Hinsen K., Larmande P., Le Bras Y., Lemoine F., Mareuil F., Ménager H., Pradal C., Blanchet C.. 2017. Future Generation Computer Systems, 75 : p. 284-298.

DOI: 10.1016/j.future.2017.01.012

Résumé

Article (a-revue à facteur d'impact)

Virtual plants need water too: Functional-structural root system models in the context of drought tolerance breeding

Ndour A., Vadez V., Pradal C., Lucas M.. 2017. Frontiers in Plant Science, 8 (1577) : 18 p..

DOI: 10.3389/fpls.2017.01577

Résumé

Article (a-revue à facteur d'impact)

What does the functional-structural plant model HydroShoot tell us about the reasons for photosynthesis depression in grapevine (¿Vitis vinifera¿ L.)photosynthesis depression?

Albasha R., Simonneau T., Pradal C., Fournier C., Lebon E.. 2017. Mendoza : COVIAR, 10 p.. GiESCO International Meeting. 20, 2017-11-05/2017-11-10, Mendoza (Argentine).

Résumé

Communication de congrès

A functional structural model of wheat leaf metabolism during extension

Schneider A., Barillot R., Chambon C., Fournier C., Pradal C., Andrieu B.. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). Qingdao : s.n., 1 p.. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 2016-11-07/2016-11-11, Qingdao (Chine).

Communication de congrès

Characterization of mango tree patchiness using a tree-segmentation/clustering approach

Fernique P., Dambreville A., Durand J.B., Pradal C., Lauri P.E., Normand F., Guédon Y.. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA). Qingdao : IEEE, p. 68-74. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 2016-11-07/2016-11-11, Qingdao (Chine).

DOI: 10.1109/FSPMA.2016.7818290

Résumé

Communication de congrès

Exploring carbon allocation with a multi-scale model: the case of apple

Reyes F., Pallas B., Pradal C., Zanotelli D., Boudon F., Vaggi F., Saudreau M., Tagliavini M., Gianelle D., Costes E.. 2016. In : Book of abstracts poster: 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). Qingdao : FSPMA, p. 84-84. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 2016-11-07/2016-11-11, Qingdao (Chine).

Résumé

Communication de congrès

Genetic variability in light-related parameters of maize models revealed by linking 3D-reconstruction of plant architecture with light model and phenotyping platform

Chen T.W., Fournier C., Artzet S., Brichet N., Chopard J., Pradal C., Alvarez-Prado S., Cabrera-Bosquet L., Welcker C., Tardieu F.. 2016. In : IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). Qingdao : s.n., 1 p.. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 2016-11-07/2016-11-11, Qingdao (Chine).

Communication de congrès

GroIMP / OpenAlea Interface: towards a formal protocol for cross-platform modelling

Long Q., Pradal C., Migault V., Merklein J., Kurth W.. 2016. Qingdao : FSPMA, 1 poster. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 2016-11-07/2016-11-11, Qingdao (Chine).

Communication de congrès

High-throughput phenotyping platform reveals genetic variability and quantitative trait loci of light-related parameters in maize models

Chen T.W., Fournier C., Artzet S., Brichet N., Chopard J., Pradal C., Alvarez-Prado S., Cabrera-Bosquet L., Welcker C., Tardieu F.. 2016. In : Seeking Sustainable Agricultural Solutions AgMIP6 Global Workshop: Oral and poster abstracts. Montpellier : AgMIP, p. 55-55. Global Workshop of the Agricultural Model Intercomparison and Improvement Project (AgMIP), 2016-06-28/2016-06-30, Montpellier (France).

Résumé

Communication de congrès

HydroShoot: a new FSPM model for simulating hydraulic structure and gas-exchange dynamics of complex plants canopies under water deficit

Albasha R., Fournier C., Pradal C., Prieto J., Louarn G., Lebon E.. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). Qingdao : s.n., 1 p.. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 2016-11-07/2016-11-11, Qingdao (Chine).

Communication de congrès

Multiscale functional-structural plant modelling at the example of apple trees: Project description

Bayol B., Cournède P.H., Sainte-Marie J., Viaud G., Chi F., Kurth W., Long Q., Merklein J., Streit K., Costes E., Migault V., Pallas B., Buck-Sorlin G.H., Poirier M., Pradal C.. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA). Qingdao : IEEE, p. 1-5. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 2016-11-07/2016-11-11, Qingdao (Chine).

DOI: 10.1109/FSPMA.2016.7818281

Résumé

Communication de congrès

OpenAleaLab: An open-source multi-paradigm - multi-language software framework for modeling morphogenesis

Pradal C., Coste J., Baty G., Ribes S., Boudon F., Godin C.. 2016. In : Book of abstracts poster: 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). Qingdao : FSPMA, p. 80-80. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 2016-11-07/2016-11-11, Qingdao (Chine).

Résumé

Communication de congrès

Reducing algorithm complexity in trees

Godin C., Boudon F., Pradal C.. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016): Book of abstract oral. Qingdao : FSPMA, p. 52-52. International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, 2016-11-07/2016-11-11, Qingdao (Chine).

Résumé

Communication de congrès

Toward the inter-comparison of radiation transfer model for plant modelling application

Fournier C., Boudon F., Chelle M., Saudreau M., Ngao J., Louarn G., Combes D., Pradal C.. 2016. In : Book of abstracts poster: 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). Qingdao : FSPMA, p. 89-89. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 2016-11-07/2016-11-11, Qingdao (Chine).

Résumé

Communication de congrès

Using combined virtual plant - pathogen models to compare the influence of wheat architecture on epidemics of two contrasted foliar fungi

Garin G., Fournier C., Pradal C., Houlès V., Robert C.. 2016. In : 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016). Qingdao : IEEE, p. 18-18. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 2016-11-07/2016-11-11, Qingdao (Chine).

Communication de congrès

IPython & Jupyter

Pradal C.. 2016. Montpellier : CIRAD-BIOS-UMR AGAP; INRIA, 1 diaporama (47 vues).

Résumé

Support de cours

Scientific workflows

Pradal C.. 2016. Saint-Jean-de-Luz : CIRAD-BIOS-UMR AGAP; INRIA, 1 diaporama (76 vues).

Résumé

Support de cours

Root system markup language: Toward a unified root architecture description language

Lobet G., Pound M.P., Diener J., Pradal C., Draye X., Godin C., Javaux M., Leitner D., Meunier F., Nacry P., Pridmore T.P., Schnepf A.. 2015. Plant Physiology, 167 (3) : p. 617-627.

DOI: 10.1104/pp.114.253625

Résumé

Article (a-revue à facteur d'impact)

A multi-scale model to explore carbon allocation in plants

Reyes F., Gianelle D., Pallas B., Costes E., Pradal C., Tagliavini M., Zanotelli D.. 2015. In : Costes Evelyne (ed.). Proceedings of the X International Symposium on Modelling in Fruit Research and Orchard Management. Louvain : ISHS, p. 285-292. (Acta Horticulturae, 1160). International Symposium on Modelling in Fruit Research and Orchard Management. 10, 2015-06-02/2015-06-05, Montpellier (France).

DOI: 10.17660/ActaHortic.2017.1160.41

Résumé

Communication de congrès

ECHAP : un projet pour identifier les possibilités de réduction de l'utilisation des fongicides en utilisant l'architecture des couverts

Robert C., Fournier C., Abichou M., Andrieu B., Bancal M.O., Barriuso E., Bedos C., Benoit P., Bergheaud V., Bidon M., Bonicelli B., Chambon C., Chapuis R., Cotteux E., Da Costa J., Durand B., Gagnaire N., Gaudillat D., Gigot C., Girardin G., Gouache D., Jean Jacques J., Mamy L., Ney B., Paveley N., Perriot B., Poidevin S., Pointet S., Pot V., Pradal C., Richard C., Saint-Jean S., Salse J., Sinfort C., Smith J., Ter Halle A., Van Den Berg E., Walker A.S.. 2015. Versailles : Groupe Français des Pesticides, 2 p.. congrès annuel du Groupe Français des Pesticides : Devenir et impact des pesticides : verrous à lever et nouveaux enjeux, 2015-05-25/2015-05-27, Versailles (France).

Communication de congrès

OpenAlea: scientific workflows combining data analysis and simulation

Pradal C., Fournier C., Valduriez P., Cohen-Boulakia S.. 2015. In : Gupta Amarnath (ed.), Rathbun Susan (ed.). Proceedings of the 27th International Conference on Scientific and Statistical Database Management. New York : ACM, 6 p.. International Conference on Scientific and Statistical Database Management. 27, 2015-06-29/2015-07-01, San Diego (Etats-Unis).

DOI: 10.1145/2791347.2791365

Résumé

Communication de congrès

Phenomenal: a software framework for model-assisted analysis of high throughput plant phenotyping data

Fournier C., Artzet S., Chopard J., Mielewczik M., Brichet N., Cabrera L., Sirault X., Cohen-Boulakia S., Pradal C.. 2015. Louvain-la-Neuve : IAMPS, 2 p.. International Workshop on Image Analysis Methods for the Plant Sciences (IAMPS). 4, 2015-09-21/2015-09-22, Louvain-la-Neuve (Belgique).

Communication de congrès

A modelling framework to simulate foliar fungal epidemics using functional-structural plant models

Garin G., Fournier C., Andrieu B., Houlès V., Robert C., Pradal C.. 2014. Annals of Botany, 114 (4) : p. 795-812.

DOI: 10.1093/aob/mcu101

Résumé

Article (a-revue à facteur d'impact)

Publishing scientific software matters [Preface]

Pradal C., Varoquaux G., Langtangen H.P.. 2013. Journal of Computational Science, 4 (5) : p. 311-312.

DOI: 10.1016/j.jocs.2013.08.001

Article (a-revue à facteur d'impact)

A generic model of interactions between FSPM, foliar pathogens and microclimate

Garin G., Pradal C., Andrieu B., Houlès V., Robert C., Fournier C.. 2013. In : Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen, Pekka Nygren. Proceedings of the 7th International Conference on Functional-Structural Plant Models (FSPM2013), Saariselkä, Finland, 9-14 June 2013. Vantaa : Finnish Society of Forest Science, p. 339-341. International Conference on Functional-Structural Plant Models. 7, 2013-06-09/2013-06-14, Saariselkä (Finlande).

Résumé

Communication de congrès

An integrated and modular model for simulating and evaluating how canopy architecture can help reduce fungicide applications

Fournier C., Pradal C., Abichou M., Andrieu B., Bancal M.O., Bedos C., Benoit P., Chambon C., Chapuis R., Cotteux E., Mamy L., Paveley N., Pot V., Saint-Jean S., Richard C., Sinfort C., Ter Halle A., Van Den Berg E., Walker A.S.. 2013. In : Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen, Pekka Nygren. Proceedings of the 7th International Conference on Functional-Structural Plant Models (FSPM2013), Saariselkä, Finland, 9-14 June 2013. Vantaa : Finnish Society of Forest Science, p. 345-348. International Conference on Functional-Structural Plant Models. 7, 2013-06-09/2013-06-14, Saariselkä (Finlande).

Résumé

Communication de congrès

Deciphering mango tree asynchronisms using Markov tree and probabilistic graphical models

Dambreville A., Fernique P., Pradal C., Lauri P.E., Normand F., Guédon Y., Durand J.B.. 2013. In : Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen, Pekka Nygren. Proceedings of the 7th International Conference on Functional-Structural Plant Models (FSPM2013), Saariselkä, Finland, 9-14 June 2013. Vantaa : Finnish Society of Forest Science, p. 210-212. International Conference on Functional-Structural Plant Models. 7, 2013-06-09/2013-06-14, Saariselkä (Finlande).

Résumé

Communication de congrès

OpenAlea 2.0: Architecture of an integrated modeling environment on the web

Pradal C., Coste J., Boudon F., Fournier C., Godin C.. 2013. In : Eds. Risto Sievänen, Eero Nikinmaa, Christophe Godin, Anna Lintunen, Pekka Nygren. Proceedings of the 7th International Conference on Functional-Structural Plant Models (FSPM2013), Saariselkä, Finland, 9-14 June 2013. Vantaa : Finnish Society of Forest Science, p. 213-213. International Conference on Functional-Structural Plant Models. 7, 2013-06-09/2013-06-14, Saariselkä (Finlande).

Résumé

Communication de congrès

L-Py: an L-system simulation framework for modeling plant architecture development based on a dynamic language

Boudon F., Pradal C., Cokelaer T., Prusinkiewicz P., Godin C.. 2012. Frontiers in Plant Science, 3 (76) : 20 p..

DOI: 10.3389/fpls.2012.00076

Résumé

Article (a-revue à facteur d'impact)

A plastic, dynamic and reducible 3D geometric model for simulating gramineous leaves

Fournier C., Pradal C.. 2012. In : Kang Meng Zhen (ed.), Dumont Yves (ed.), Guo Yan (ed.). Plant growth modeling, simulation, visualization and applications. Proceedings PMA12 : The Fourth International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Shanghai, China, 31 October-3 November 2012. Piscataway : IEEE, p. 125-132. International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA12). 4, 2012-10-31/2012-11-03, Shanghai (Chine).

Résumé

Communication de congrès

Investigating the influence of geometrical traits on light interception efficiency of apple trees: a modelling study with MAppleT

Han L., Costes E., Boudon F., Cokelaer T., Pradal C., Da Silva D., Faivre R.. 2012. In : Kang Meng Zhen (ed.), Dumont Yves (ed.), Guo Yan (ed.). Plant growth modeling, simulation, visualization and applications. Proceedings PMA12 : The Fourth International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Shanghai, China, 31 October-3 November 2012. Piscataway : IEEE, p. 152-159. International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA12). 4, 2012-10-31/2012-11-03, Shanghai (Chine).

Résumé

Communication de congrès

A novel profile based model for virtual representation of quasi-symmetric plant organs

Mebatsion H.K., Boudon F., Godin C., Pradal C., Génard M., Goz-Bac C., Bertin N.. 2011. Computers and Electronics in Agriculture, 75 (1) : p. 113-124.

DOI: 10.1016/j.compag.2010.10.006

Résumé

Article (a-revue à facteur d'impact)

Dealing with plant phenotypic plasticity using FSPM: opportunities and challenges for plant breeding. The rice example

Luquet D., Rebolledo M.C., Dingkuhn M., Clément-Vidal A., Pradal C., Soulie J.C.. 2011. In : 1st French-Brazilian Meeting on Functional-Structural Plant Modeling (FSPM), October 24-27, 2011, Campinas, Brazil. s.l. : s.n., (21 vues). French-Brazilian FSPM Meeting. 1, 2011-10-24/2011-10-27, Campinas (Brésil).

Communication de congrès

Intérêts des plateformes de modélisation pour améliorer l'application du modèle ecomeristem en appui au phénotypage et ideotypage

Luquet D., Soulie J.C., Pradal C., Ramat E.. 2011. In : Journées annuelles 2011 du Réseau IGEC (Interaction Génotype-Environnement-Conduite), 21-22 novembre 2011, Paris, France. s.l. : s.n., (8 vues). Journées annuelles 2011 du Réseau IGEC, 2011-11-21/2011-11-22, Paris (France).

Communication de congrès

L-Py: L-Systems in Python : [Présentation #4458]

Boudon F., Pradal C.. 2011. In : EuroSciPy 2011, August 25-28, Paris. s.l. : s.n., 2 p.. European Meeting on Python in Science. 4, 2001-08-25/2001-08-28, Paris (France).

Communication de congrès

Scientific workflow for reusing plant/FSPM models

Chopard J., Pradal C., Barbeau D., Cokelaer T., Godin C.. 2011. In : Chan F. (ed.), Marinova D. (ed.), Anderssen R.S. (ed.). 19th International Congress on Modelling and Simulation (MODSIM2011), Perth, Australia, 12 to 16 December 2011. Canberra : MSSANZ, p. 968-974. International Congress on Modelling and Simulation. 19, 2011-12-12/2011-12-16, Perth (Australie).

Résumé

Communication de congrès

Building modular FSPM under OpenAlea : concepts and applications

Fournier C., Pradal C., Louarn G., Combes D., Soulie J.C., Luquet D., Boudon F., Chelle M.. 2010. In : Dejong Thedore M. (ed.), Da Silva David (ed.). Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Davis : University of California, p. 109-112. International Workshop on Functional-Structural Plant Models. 6, 2010-09-12/2010-09-17, Davis (Etats-Unis).

Communication de congrès

Feedbacks between plant microclimate and morphogenesis in fluctuating environment : analysis for rice using Ecomeristem model coupled with 3D plant and energy balance computation tools in OpenAlea platform

Soulie J.C., Pradal C., Fournier C., Luquet D.. 2010. In : Dejong Thedore M. (ed.), Da Silva David (ed.). Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Davis : University of California, p. 138-140. International Workshop on Functional-Structural Plant Models. 6, 2010-09-12/2010-09-17, Davis (Etats-Unis).

Communication de congrès

L-Py, an open L-systems framework in Python

Boudon F., Cokelaer T., Pradal C., Godin C.. 2010. In : Dejong Thedore M. (ed.), Da Silva David (ed.). Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Davis : University of California, p. 116-119. International Workshop on Functional-Structural Plant Models. 6, 2010-09-12/2010-09-17, Davis (Etats-Unis).

Communication de congrès

Modeling strategies using visual programming in OpenAlea

Pradal C., Cokelaer T., Barbeau D., Moscardi E., Chopard J., Godin C.. 2010. In : Dejong Thedore M. (ed.), Da Silva David (ed.). Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Davis : University of California, p. 113-115. International Workshop on Functional-Structural Plant Models. 6, 2010-09-12/2010-09-17, Davis (Etats-Unis).

Communication de congrès

Modelling of the airborne dispersal of a pathogen over a structured vegetal cover

Mammeri Y., Burie J.B., Calonnec A., Cokelaer T., Costes E., Langlais M., Pradal C.. 2010. In : Dejong Thedore M. (ed.), Da Silva David (ed.). Proceedings of the 6th International Workshop on Functional-Structural Plant Models, FSPM 2010, September 12-17, 2010, University of California, Davis (USA). Davis : University of California, p. 55-57. International Workshop on Functional-Structural Plant Models. 6, 2010-09-12/2010-09-17, Davis (Etats-Unis).

Communication de congrès

VisuAlea, towards a scientific modelling environment using visual programming

Pradal C., Barbeau D., Cokelaer T., Moscardi E.. 2010. In : Annual European Conference for Scientists Unsing Phyton EuroSciPy 2010, Paris, 8-11 July 2010. s.l. : s.n., 1 p.. Annual European Conference for Scientists Using Phython, 2010-07-08/2010-08-11, Paris (France).

Résumé

Communication de congrès

PlantGL : A python-based geometric library for 3D plant modelling at different scales

Pradal C., Boudon F., Nouguier C., Chopard J., Godin C.. 2009. Graphical Models, 71 : p. 1-21.

DOI: 10.1016/j.gmod.2008.10.001

Résumé

Article (a-revue à facteur d'impact)

Sharing efforts for modelling plant systems: from publications to reusable software components

Fournier C., Pradal C., Chelle M., Boudon F., Louarn G., Robert C., Combes D., Cokelaer T., Bertheloot J., Ma K., Saint-Jean S., Verdenal A., Escobar-Gutièrrez A., Andrieu B., Godin C.. 2009. Comparative Biochemistry and Physiology. Part A, Molecular and Integrative Physiology, 153 (2) : S222.

DOI: 10.1016/j.cbpa.2009.04.549

Résumé

Article (a-revue à facteur d'impact)

OpenAlea: a visual programming and component-based software platform for plant modelling

Pradal C., Dufour-Kowalski S., Boudon F., Fournier C., Godin C.. 2008. Functional Plant Biology, 35 (9-10) : p. 751-760. International Workshop on Functional-Structural Plant Models. 5, 2007-11-04/2007-11-09, Napier (Nouvelle-Zélande).

DOI: 10.1071/FP08084

Résumé

Article (a-revue à facteur d'impact)

Compression progressive de modèles de plantes à base de cylindres généralisés

Mondet S., Boudon F., Hoelt J.C., Morin G., Grigoras R., Pradal C., Paulin M.. 2007. In : Association francophone d'informatique graphique. Journées de l'Association francophone d'informatique graphique. s.l. : s.n., p. 197-204. Journées de l'Association francophone d'informatique graphique. 20, 2007-11-26/2007-11-28, Marne-la-Vallée (France).

Résumé

Communication de congrès

Modeling of light transmission under heterogeneous forest canopy : model description and validation

Da Silva D., Balandier P., Boudon F., Marquier A., Pradal C., Godin C., Sinoquet H.. 2007. In : Eds by Prusinkiewicz P., Hanan J., Lane B. Proceedings : Abstracts of papers and posters of the 5th International Workshop on Functional Structural Plant Models, November 4-9, 2007, Napier, New Zealand. Napier : HortResearch, 58 (4 ). International Workshop on Functional-Structural Plant Models. 5, 2007-11-04/2007-11-09, Napier (Nouvelle-Zélande).

Communication de congrès

OpenAlea: An open-source platform for the integration of heterogeneous FSPM components

Dufour-Kowalski S., Pradal C., Dones N., Barbier de Reuille P., Boudon F., Chopard J., DaSilva D., Durand J.B., Ferraro P., Fournier C., Guédon Y., Ouangraoua A., Smith C., Stoma S., Théveny F., Sinoquet H., Godin C.. 2007. In : Eds by Prusinkiewicz P., Hanan J., Lane B. Proceedings : Abstracts of papers and posters of the 5th International Workshop on Functional Structural Plant Models, November 4-9, 2007, Napier, New Zealand. Napier : HortResearch, p. 36-1. International Workshop on Functional-Structural Plant Models. 5, 2007-11-04/2007-11-09, Napier (Nouvelle-Zélande).

Communication de congrès

The architecture of OpenAlea : A visual programming and component based software for plant modeling

Pradal C., Dufour-Kowalski S., Boudon F., Dones N.. 2007. In : Eds by Prusinkiewicz P., Hanan J., Lane B. Proceedings : Abstracts of papers and posters of the 5th International Workshop on Functional Structural Plant Models, November 4-9, 2007, Napier, New Zealand. Napier : HortResearch, p. 25-1. International Workshop on Functional-Structural Plant Models. 5, 2007-11-04/2007-11-09, Napier (Nouvelle-Zélande).

Communication de congrès

PlantGL : a python-based geometric library for 3D plant modelling at different scales

Pradal C., Boudon F., Nouguier C., Chopard J., Godin C.. 2007. Le Chesnay : INRIA, 42 p.. (Rapport de recherche : INRIA. Thème BIO, 6367).

Résumé

Document technique

Estimating the fractal dimension of plants using the two-surface method: An analysis based on 3D-digitized tree foliage

Boudon F., Godin C., Pradal C., Puech O., Sinoquet H.. 2006. Fractals, 14 (3) : p. 149-163.

DOI: 10.1142/S0218348X06003179

Résumé

Article (a-revue à facteur d'impact)

Modeling directional anisotropy of thermal infrared measurements over a pine forest canopy

Kurz B., Lagouarde J.P., Moreau P., Guyon D., Champion I., Ogée J., Boudon F., Caraglio Y., Godin C., Pradal C.. 2006. In : Sobrino José A. (ed.). Second recent advances in quantitative remote sensing (RAQRS'II), Auditori de Torrent, Spain, 25-29 September 2006. Valence : Universitat de Valencia, p. 320-325. International Symposium on Recent Advances in Quantitative Remote Sensing. 2, 2006-09-25/2006-09-29, Valence (Espagne).

Résumé

Communication de congrès

OpenAlea : a platform for plant modelling analysis and simulation

Pradal C., Boudon F., Dones N., Durand J.B., Barbier de Reuille P., Fournier C., Sinoquet H., Godin C.. 2006. In : Europhyton 2006, Genève, Suisse, 03-05 juillet 2006. s.l. : s.n., (27 vues). Europhyton 2006, 2006-07-03/2006-07-05, Genève (Suisse).

Communication de congrès

ALEA : Atelier logiciel libre pour la modélisation des plantes

Pradal C., Godin C.. 2005. In : Causeries d'Intech' Sophia, 30-06-2005, Sophia-Antipolis, France. s.l. : s.n., (19 vues). Causeries d'Intech' Sophia, 2005-06-30, Sophia Antipolis (France).

Communication de congrès

ALEA: A software for integrating analysis and simulation tools for 3D architecture and ecophysiology

Pradal C., Dones N., Godin C., Barbier de Reuille P., Boudon F., Adam B., Sinoquet H.. 2004. In : Godin Christophe (ed.), Hanan Jim (ed.), Kurth Winfried (ed.), Lacointe André (ed.), Takenaka Akio (ed.), Prusinkiewicz Przemyslaw (ed.), Dejong Thedore M. (ed.), Beveridge Christine (ed.). Proceedings of the 4th International workshop on functional-structural plant models (FSPM), abstracts of papers and posters, 7-11 June 2004, Montpellier, France. Montpellier : CIRAD-AMAP, p. 406-406. International Workshop on Functional-Structural Plant Models (FSPM). 4, 2004-06-07/2004-06-11, Montpellier (France).

Communication de congrès

GEOM Module manual. I. user guide

Boudon F., Nouguier C., Godin C., Pradal C.. 2003. Montpellier : CIRAD, 74 p..

Document technique