Chado Controller : Advanced annotation management with a community annotation system
Guignon V., Droc G., Alaux M., Baurens F.C., Garsmeur O., Poiron C., Carver T.L.W., Rouard M., Bocs S.. 2012. Bioinformatics, 28 (7) : p. 1054-1056.
Summary: We developed a controller that is compliant with the Chado database schema, GBrowse and genome annotation-editing tools such as Artemis and Apollo. It enables the management of public and private data, monitors manual annotation (with controlled vocabularies, structural and functional annotation controls) and stores versions of annotation for all modified features. The Chado controller uses PostgreSQL and Perl. Availability: The Chado Controller package is available for download at http://www.gnpannot.org/content/chado-controller and runs on any Unix-like operating system, and documentation is available at http://www.gnpannot.org/content/chado-controller-doc The system can be tested using the GNPAnnot Sandbox at http:// www.gnpannot.org/content/gnpannot-sandbox-form.
Mots-clés : système d'information; banque de gènes; application des ordinateurs; génome; séquencage
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Agents Cirad, auteurs de cette publication :
- Baurens Franc-Christophe — Bios / UMR AGAP
- Droc Gaëtan — Bios / UMR AGAP
- Garsmeur Olivier — Bios / UMR AGAP
- Guignon Valentin — Bios / UMR AGAP
- Rouard Mathieu — Bios / UMR AGAP
- Sidibé-Bocs Stéphanie — Bios / UMR AGAP