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Using TropGeneDB: a database containing data on molecular markers, QTLs, maps, genotypes, and phenotypes for tropical crops

Ruiz M., Sempere G., Hamelin C.. 2017. In : Van Dijk Aalt D.J. (ed.). Plant genomics databases: methods and protocols. New York : Springer [Etats-Unis], p. 161-172. (Methods in Molecular Biology, 1533).

TropGeneDB (http://tropgenedb.cirad.fr) is a web database that manages genomic, genetic, and phenotypic information on tropical crops. It is organized on a crop basis with currently nine public modules: banana, cocoa, coconut, coffee, cotton, oil palm, rice, rubber tree, and sugarcane. TropGeneDB contains data on molecular markers, quantitative trait loci (QTLs), genetic and physical maps, genotyping and phenotyping studies, and information on genetic resources (geographic origin, parentage, collection). Crop-specific web interfaces have been designed to allow quick consultations as well as personalized complex queries. (Résumé d'auteur)

Mots-clés : theobroma cacao; zea mays; gossypium; saccharum officinarum; hevea brasiliensis; elaeis guineensis; coffea; cocos nucifera; oryza sativa; distribution géographique; gène; carte génétique; locus des caractères quantitatifs; ressource génétique végétale; zone tropicale; plante de culture; génotype; phénotype; internet; système d'information; marqueur génétique; banque de données; monde; qtl

Thématique : Génétique et amélioration des plantes; Documentation et information

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