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Using TropGeneDB: a database containing data on molecular markers, QTLs, maps, genotypes, and phenotypes for tropical crops

Ruiz M., Sempere G., Hamelin C.. 2017. In : Van Dijk Aalt D.J. (ed.). Plant genomics databases: methods and protocols. New York : Springer [Etats-Unis], p. 161-172. (Methods in Molecular Biology, 1533).

TropGeneDB (http://tropgenedb.cirad.fr) is a web database that manages genomic, genetic, and phenotypic information on tropical crops. It is organized on a crop basis with currently nine public modules: banana, cocoa, coconut, coffee, cotton, oil palm, rice, rubber tree, and sugarcane. TropGeneDB contains data on molecular markers, quantitative trait loci (QTLs), genetic and physical maps, genotyping and phenotyping studies, and information on genetic resources (geographic origin, parentage, collection). Crop-specific web interfaces have been designed to allow quick consultations as well as personalized complex queries. (Résumé d'auteur)

Mots-clés : banque de données; marqueur génétique; système d'information; internet; phénotype; génotype; plante de culture; zone tropicale; ressource génétique végétale; locus des caractères quantitatifs; carte génétique; gène; distribution géographique; oryza sativa; cocos nucifera; coffea; elaeis guineensis; hevea brasiliensis; saccharum officinarum; gossypium; zea mays; theobroma cacao; monde; qtl

Thématique : Génétique et amélioration des plantes; Documentation et information

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