Information criteria and approximate Bayesian computing for agent-based modelling in ecology: New tools to infer on Individual-level processes
Piou C.. 2015. Biomath Communications, 2 (1) : 1 p.. International conference on Mathematical Methods and Models in Biosciences (Biomath 2015), 2015-06-14/2015-06-19, Blagoevgrad (Bulgarie).
DOI: 10.11145/511
Agent or individual based models (ABMs) are computer simulation tools to represent complex systems where the unique autonomous individuals constituting the system interact, adapt or evolve. In ecology, ABMs have been applied to analyse the influence of individual variability, spatial interactions, development, behaviour, learning or genetic variability on group, population or community dynamics [1]. During the last 20 years, the approach of pattern-oriented modelling (POM) has been helping in making the use of ABMs more robust and reliable [2]. Two main elements of POM are a) ``inverse modelling'' to reduce parameter uncertainty and b) ``strong inferences'' to test how well alternative model versions changing in certain individual-level processes are at explaining multiple patterns observed at the population and/or community level. The latter has many parallels to model selection procedures in statistical modelling ( ``mutlimodel inference'' [3]). The inverse modelling borrows also concept and tools from statistics to fit unknown or uncertain parameters to real-world data. With the development of approximate Bayesian computing (ABC) in ecology [4] some propositions were made to use ABC in ABMs [5]. Bridging the two main elements of POM, an information criterion was proposed [6] that borrows concept of ABC such as Markov Chains Monte Carlo simulations without likelihood functions and multimodel inference in Bayesian context. This criterion (POMIC for pattern-oriented modelling information criterion) was applied in the original proposition paper to forest growth simulations to infer on individual tree growth function. Recently, it was applied to locust to infer on individual behaviour at hatching [7]. These kinds of cryptic processes (tree individual growth or animals' behaviour during first hours) can typically be analysed following few isolated individuals in natural or experimental conditions. However, in the context of inter-individual interactions, experimental d
Mots-clés : méthode statistique; modèle de simulation; modèle mathématique; écologie; variation génétique; compétition végétale; croissance; dynamique des populations; arbre; analyse de données; traitement de l'information
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Agents Cirad, auteurs de cette publication :
- Piou Cyril — Bios / UMR CBGP