Rainfed agriculture on smallholder farms across the tropics is crucial for food security and livelihoods when availability of irrigated land is limited. Coarse-textured soils with low organic carbon and poor inherent fertility prevail in these systems (Tittonell and Giller,2013). In the absence of sufficiently remunerative market, small holders cannot afford mineral fertilizers so that nutrient inputs are generally limited to manure. Integrated soil fertility management, e.g. integration of legumes combined with additional supply of mineral fertilizers, is required to sustainably increase rainfed agriculture productivity (Vanlauwe et al. 2014). In Madagascar, most small holders do not use mineral fertilizer under rainfed agriculture. Incorporation of Nitrogen (N) rich crop residues could increase nutrient supply and improve N use efficiency(Aggarwal et al.,1997). Nutrient supply from residues is a complex process related to decomposition rates of residue, which is impacted by residue type and climate variability, e.g increased temperatures can accelerate residue decomposition while intense rainfall can increase the loss of the precious mineralized N through leaching. The potential contribution of N rich crop residues to increase staple crop productivity is therefore complex to anticipate. Soil-crop models can account for such complexity. This study aims at(i) calibrating the STICS crop model for rice yield modeling in the smallholder context of cool humid uplands in Madagascar and (ii) use the model to explore the effect of incorporation of rice and legume residues for low (25kgN ha-1) and high (160kg N ha-1) fertilizer inputs with a variable climate. The soil-crop model STICS (Brisson et al., 2003) was chosen for its capacity to account for soil water and nutrient dynamics during crop cycle for various climates and crop management. Rice experiments (cultivar NERICA 4) carried out in 2016-2017 and 2017-2018 cropping season in Ivory(19°33'S, 46°24'E, 950 m a.s.l)on F