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Validation of a nested PCR assay for detection of Xanthomonas axonopodis pv. dieffenbachiae in anthurium tissue in a European multicenter collaborative trial : [P2-11]

Jouen E., Chabirand A., Robène-Soustrade I., Gagnevin L., Chiroleu F., Saison A., Boyer C., Cassam N., Laurent A., Hostachy B., Bergsma-Vlami M., Bianchi G., Cozzoli L., Cudejkova M., Elphinstone J., Holeva M.C., Manole F., Martini P., Minatchy J., Op de Beeck G., Sigillo L., Siverio de la Rosa F., Soubelet H., Van Vaerenbergh J., Pruvost O.. 2010. In : Proceedings of the 12th International Conference on Plant Pathogenic Bacteria : programme, abstracts, list of participants. s.l. : s.n., p. 50-50. International Conference on Plant Pathogenic Bacteria. 12, 2010-06-07/2010-06-11, Saint-Denis (Réunion).

Xanthomonas axonopodis pv. dieffenbachiae (Xad) is the etiological agent of anthurium bacterial blight. Xad is a quarantine organism in several countries and particularly in Europe where this pathogen is listed in the A2 list of the European and Mediterranean Plant Protection Organization (EPPO). A collaborative trial involving 15 European laboratories was performed to evaluate a Nested PCR assay (1) (NPCR) for the detection of Xad from anthurium samples. This collaborative study was conducted according to the ISO 16140:2003 standard "Protocol for validation of alternative methods"(3). The ISO 16140 validation protocol comprises two phases: a comparative study of methods and a collaborative trial. The comparative study was carried out in the organizing laboratory (CIRAD/LNPV Reunion Island). Methods such as the EPPO reference method for detection of Xad, the N-PCR assay, immunofluorescence (IF) and double antibody sandwich ELISA (DAS-ELISA) were compared. It was shown noticeably differences in performance between methods. The reference and N-PCR methods were the most efficient techniques, both combining a very3 good inclusivity, exclusivity, a relative accuracy above 95% and a low detection threshold (approximately 10 CFU.mL-1). The collaborative trial consisted in determining the variability of the results obtained by several different competent laboratories using identical samples and in comparing these results to those obtained with the comparative study. Four blinded samples (8 replicates/sample) were analysed by the 15 laboratories. The four samples were constituted of an anthurium extract artificially contaminated with variable concentrations of the pathotype strain (0, 104 or 105 CFU.mL-1), or with a non-target strain (107CFU.mL-1). The N-PCR assay was performed in comparison to a reference method (isolation of the bacteria on non-selective and semi-selective media followed by a serological identification by indirect ELISA) and to other methods, DASELISA

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